Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04257 ATGTCGATTAAGCGTACTACGAAAATTGAAATGCCGAAATTGAAACGGTGTAAATTGGAGGAACCTGATGATGTAGGTCATGGACGGTGTTCTGGGATTGAGAAGAAGCGTAAGGGGAATGGGTTTTACTCTTTGGGTGATGCTGAAGATTTCAGTAGTGGTTCTGCTTCTTGGAATAGTGAAGTTTCGCATTCTGCATGTGATGGTGGTGGTGAGGTTGAGTTTAATTCAAGTTCCGCGTCTCGGCCTCCTTTGTTGCGGTCCTCACGTGGTCGCGTTCAGACGCTTCCGTCGAGGTTTAATGATTCTGTGGTTCTTGATACATGGAAGAATCGAGGAATGAAAGCCGAGGATGGAGATGGGGATTCGAGCTTTGAAGATGATAAGAGTTTTGTTGAGAACGATCGAGTTAAGTATAGTGACGGGAATTGTTTGAAAAATTCTGTGTGTTTTCCATTTGTTGAAATGAAGGTAGATAAAAAGGAGGGTGGTCATTTTTCTAGTGTGGTTAGAAAGACGATGAAGACTGACAGCAATGCTTCTGGTTCTGGTCTTAGTTTTGAGGATGTAGAGCATAAGACTAATGGGAATGATGGAAAGAGGAGAGAGGTTTATAGGCCAGAGGATTTTGCTCTTGGTGATATTGTTTGGGCCAAATGTGGGAAGAGATATCCAGCTTGGCCTGCTGTGGTGATTGATCCCCTCTTAGAGGCTCCTAAATCCGTCTTGGACTGTTGTGTTCCTTTTGCGATTTGTGTGATGTTTTTTGGTTATTCGAAAAATGGGACTCAAAGGGATTATGCATGGGTGAAACAGGGGATGATATTCCCCTTCTCGGAATTCATGAACAGATTTCAGGGGCAGACCCAGTTGTTCAAGTGCAAACCAAGTGACTTTCGCATGGCCGTGGAGGAGGCAAAGTTGGCAAAAGATGGTATTCTAGAATCACATTTGCGAGCGGAGGAAGTGACTAATGTAGAAGCTCAACCTGATAGAGTTGAAGAGGTCACGATTTCAAATATTGATCAGGATTATTACTGCCAGGATCAGGATACTAGATGTTGTGACAGCTGTGGTCTGATGTTGCCATGCAAAACCATGAAGAAGGTTAAGGGTTCAAGTTATGCACCACAATTTCATTGCAAACACTGTTTGAAGTTACGAAAATCAAAACAATATTGTGGAATTTGCAAAAAGATTTGGCACCATTCTGATGGTGGGGATTGGGTATGTTGTGATGGTTGCAATGTATGGGTGCATGCTGAGTGTGACAAAATTTCTACCGAACATTTCAAGGATCTGGAAAATACCGATTACTATTGTCCAGATTGCAAGAAAAGTATCAATTGTAAACTACCAGAAGCAACAGCATACAAATCAAAAATCAAATCAGTGGAGTGTAGCCAAAATGGTGTGTTTCCTGAGAAGTTAATGGTGGTGTGCAATGGAATGGAAGGAATTTACTTCCCAAAGCTTCATTTAATTATGTGCAAGTGTGTCTCTTGTGATTCAAAAAAGCGGACACCCAGTGAATGGGAACGACATACTGGAAGCAGAGCCAAAAAATGGAAATACAGTGTGAAAGTGAAAAGCACAATGCTACCACTTGAAAAATGGATCACGGAGCATATTTCACAAGATGGGGTTCCCCAGGAATTAAATCAGCAGCAGGTGCTTGCTTTTTTGCAAGAGAAGTATGAGCCAGTTCGTGCAAAATGGACGACAGAAAGATGTGCTGTTTGTAGATGGGTTGAGGATTGGGAAGATAACAAATTTATTATCTGTAACAGGTGCCAAATAGCAGTCCACCAGGAATGCTATGGTGCAAAGCATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCCGATGTTGAAAGAGACTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTCGAGATGTTATGGGTTCATGTAACATGCGCTTGGTTTCAACGTGAAGTTGTTTTCAAAAACCCTTTGGTCATGGAACCTGCCCTTGGAATTCTTAGAATTCCTCCTAATTCCTTTGTCAAGACTTGTGTAATTTGTAAACAAAGTCACGGTTCTTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTAATGTGCGCATCAAGAGCTGGGTATACCATGGAATTGCATTCCAGGGTGAAGAATGGGATTCAAATAACAAAGAAGTTAATTTACTGCGCAGTTCATAGAGTCCCAAGTCCTGATTCTGTACTGGTTGCACATTCTTCCCTGGGGATTTTCTCTCCTAGAACTTCAATTCAAAATCACAAGGGATCCTTCCGGGGATCAAGGCTGGTTTCATCAAAGAATATAGAGTTCAATGAATGTTCAACTTCAACCACTGAAAATGATAGGGTTGAGCCATTTTCTACTGCCAGATGCCGCGTGTACCGAAGTTCTCCAATTAAGAGAGCTAATGTGCTGCCAATAATTCACTTGCTGAGGGGACCCAGCCTTCATTCTATAAGCGAAATAACTCAATTGAACAATTATAAGGTTGCTGAAGTATTTACTTCTTTCAAGGAACGTCTTCACCATCTGCAGAAAACTGAAAAACTTAGAATTTGCTTCGGAAAATCGGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGATATGGTTGTTGAGTATCGTGGTGAACAGGTAAGGCGTAGTATTGCCGATCTGAGAGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGTGAGGAAGTAGTCATCGATGCAACATACAGGGGAAATATAGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCTATGCAAGGATTTTGAGTTTGGGTGATCAAGGGAGCCGGATTGTTCTTATTGCCAAAACCAATGTTTCTGCTGGTCAAGAACTAACGTATGATTACTTGTTTGATCCAGATGAGCAGGAAGATTTGAAAGTTCCCTGCCTTTGCAAAGCACTCAATTGTAGAAAATTTATGAACTAG 3030 0.4149 MSIKRTTKIEMPKLKRCKLEEPDDVGHGRCSGIEKKRKGNGFYSLGDAEDFSSGSASWNSEVSHSACDGGGEVEFNSSSASRPPLLRSSRGRVQTLPSRFNDSVVLDTWKNRGMKAEDGDGDSSFEDDKSFVENDRVKYSDGNCLKNSVCFPFVEMKVDKKEGGHFSSVVRKTMKTDSNASGSGLSFEDVEHKTNGNDGKRREVYRPEDFALGDIVWAKCGKRYPAWPAVVIDPLLEAPKSVLDCCVPFAICVMFFGYSKNGTQRDYAWVKQGMIFPFSEFMNRFQGQTQLFKCKPSDFRMAVEEAKLAKDGILESHLRAEEVTNVEAQPDRVEEVTISNIDQDYYCQDQDTRCCDSCGLMLPCKTMKKVKGSSYAPQFHCKHCLKLRKSKQYCGICKKIWHHSDGGDWVCCDGCNVWVHAECDKISTEHFKDLENTDYYCPDCKKSINCKLPEATAYKSKIKSVECSQNGVFPEKLMVVCNGMEGIYFPKLHLIMCKCVSCDSKKRTPSEWERHTGSRAKKWKYSVKVKSTMLPLEKWITEHISQDGVPQELNQQQVLAFLQEKYEPVRAKWTTERCAVCRWVEDWEDNKFIICNRCQIAVHQECYGAKHVQDFTSWVCRVCETPDVERDCCLCPVKGGALKPTDVEMLWVHVTCAWFQREVVFKNPLVMEPALGILRIPPNSFVKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYTMELHSRVKNGIQITKKLIYCAVHRVPSPDSVLVAHSSLGIFSPRTSIQNHKGSFRGSRLVSSKNIEFNECSTSTTENDRVEPFSTARCRVYRSSPIKRANVLPIIHLLRGPSLHSISEITQLNNYKVAEVFTSFKERLHHLQKTEKLRICFGKSGIHGWGLFARRDIQEGDMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISEEVVIDATYRGNIARLINHSCMPNCYARILSLGDQGSRIVLIAKTNVSAGQELTYDYLFDPDEQEDLKVPCLCKALNCRKFMN 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04257 1009 PANTHER PHD FINGER PROTEINS 12 986 - -
Vivi7g04257 1009 CDD PHD_ATX3_4_5_like 577 623 IPR042011 -
Vivi7g04257 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 450 IPR013083 -
Vivi7g04257 1009 MobiDBLite consensus disorder prediction 21 42 - -
Vivi7g04257 1009 FunFam Histone-lysine N-methyltransferase 843 1009 - -
Vivi7g04257 1009 FunFam Histone-lysine N-methyltransferase 627 746 - -
Vivi7g04257 1009 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1009 IPR025780 -
Vivi7g04257 1009 Pfam PWWP domain 213 308 IPR000313 -
Vivi7g04257 1009 SMART PWWP_4 210 279 IPR000313 -
Vivi7g04257 1009 Pfam PHD-zinc-finger like domain 631 743 - -
Vivi7g04257 1009 ProSiteProfiles Extended PHD (ePHD) domain profile. 629 744 IPR034732 -
Vivi7g04257 1009 Pfam PHD-finger 393 446 IPR019787 -
Vivi7g04257 1009 SUPERFAMILY SET domain 860 1006 IPR046341 -
Vivi7g04257 1009 CDD PWWP_AtATX3-like 213 312 - -
Vivi7g04257 1009 SUPERFAMILY FYVE/PHD zinc finger 391 453 IPR011011 -
Vivi7g04257 1009 SUPERFAMILY SAND domain-like 475 535 IPR010919 -
Vivi7g04257 1009 SMART PHD_3 393 445 IPR001965 -
Vivi7g04257 1009 SMART PHD_3 688 744 IPR001965 -
Vivi7g04257 1009 SMART PHD_3 577 624 IPR001965 -
Vivi7g04257 1009 Pfam PHD-finger 590 624 - -
Vivi7g04257 1009 CDD SET_SETD1-like 856 1005 - -
Vivi7g04257 1009 Pfam SET domain 878 983 IPR001214 GO:0005515
Vivi7g04257 1009 Gene3D - 471 554 IPR010919 -
Vivi7g04257 1009 Gene3D - 200 316 - -
Vivi7g04257 1009 SUPERFAMILY Tudor/PWWP/MBT 203 336 - -
Vivi7g04257 1009 ProSiteProfiles SET domain profile. 867 984 IPR001214 GO:0005515
Vivi7g04257 1009 Gene3D SET domain 849 1009 IPR046341 -
Vivi7g04257 1009 ProSiteProfiles Zinc finger PHD-type profile. 391 447 IPR019787 -
Vivi7g04257 1009 CDD PHD_TCF19_like 394 444 - -
Vivi7g04257 1009 SMART PostSET_3 993 1009 IPR003616 -
Vivi7g04257 1009 SUPERFAMILY FYVE/PHD zinc finger 576 640 IPR011011 -
Vivi7g04257 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 745 IPR013083 -
Vivi7g04257 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 626 IPR013083 -
Vivi7g04257 1009 ProSitePatterns Zinc finger PHD-type signature. 578 623 IPR019786 -
Vivi7g04257 1009 SMART set_7 867 990 IPR001214 GO:0005515
Vivi7g04257 1009 MobiDBLite consensus disorder prediction 177 201 - -
Vivi7g04257 1009 ProSiteProfiles PWWP domain profile. 212 281 IPR000313 -
Vivi7g04257 1009 ProSiteProfiles Post-SET domain profile. 993 1009 IPR003616 -
Vivi7g04257 1009 ProSiteProfiles Zinc finger PHD-type profile. 575 626 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04257 Vivi-Chr7 111162953 111172621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04257 350 418 EF-hand Containing Proteins AT5G28340 57.971 4.65e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi7g04257 zf-HC5HC2H_2 1.7e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04257 - - gmx:100793624 1521.52