Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04239 ATGCCCTCAAAACTCTTCTTATCACAAATGCGTCTTCTTCACTCTCCATTTCTCTCTCAATCTCTCATCAAACTCTCCCACCTCCCACTCCGCAACGCCGCGTTTCGTCCTCGAACTTTCTCCGTCCGTCCTGACAGAATCAGAGCTTCCAAAAGCCTCGTCGACGACGAGGCCGAGCTCAGTAACTGGGTCGACGACTTGCGAACCGGTCGCGAAACTCCCGAGACCACTAGACCGGGTTCTGGTCCTGGTAAAGATAGCGGGTTCCGGTCACGGAAGAGTAGTGCTGTTAGTAGGGGTTCTGGTTTGGGAGAAAGAAGGGGTGGTGATTTTAGGAAGGGGAAACCTAGTTTGAATTCGAAGAGGAGGTTTCCGGTGAGGAGTGATAGTAGTGATGTTGAGGATGAGGTTGTGGATGTAGGCAAGTTTAAAGGTGGTGGTGGTGGTTCGGGAAGTATTGGTAGGTTTATTAGTGAAGAAGAAACTGAAGATGAGATTGAAGGAGAAGAAAGTGATGAGGAGATTGTTGAAAAGAGTAGAAGTGTTTTGTTTGGTAAAAAAGTAAGTGGCTTGTCAACAACAACAACAACTACTACTACTAGACCTGCTTCATCTGGTGGAAGTGATTCTTATTTAAGCGAATCCAGATTCGACCAGTGTTCAGTCTCTCCACTGTCCTTAAAAGGAGTCAAGGATGCTGGGTATGAGAAAATGACTGTTGTGCAGGAGGCTACCCTTCCAGTAATTCTTAAAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAATTGTTGTGAAGTCTCCACCAAGTGACCGTGATCAAAGGCGACCACCAATTTTTATTCTTGTCATATGTCCTACTCGAGAACTTGCTTGTCAAGCTGCTGCCGAAGCCACTAAACTGCTTAAGTATCATCCTACCTTAGGTGTTCAAGTTGTGATTGGAGGAACAAGACTCACATTAGAACAGAAACGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATATTGAAAATACCGCTGGTTTTGCATCCAGGCTTATGGGGGTGAAGGCTTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCTGCAATCCCTAAACAACGACAGACACTTATGTTTTCTGCAACAATTCCTGACGAGGTGCGCCAAGTCTGCCATATTGCTATGAAAAGGGATTTTGAATATATTAATACAGTACAGGAGGGTAGTGAGGATACACATGCACAGGTCCGCCAAATGCATTTAGTTGCACCATTAGAGAAGCATTTCCCTTTACTCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACCGCCATGGTCACAAGACTTGTTGCTGATCTCCTTGGGGAGTTGAACTTGAATGTCAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGGGTTTCTGATGAATTCCGGAAGTCAAAGGGTCTCATCTTGGTTACTTCGGATGTATCCGCACGTGGAGTTGATTATCCGGATGTTACTCTTGTTGTACAGGTTGGTCTGCCGGCTGATAGAGAACAATATATACATAGACTAGGTAGAACAGGACGAAGAGGAAAAGAAGGGCAGGGCATACTGCTGCTTGCTCCTTGGGAAGAGTTCTTTTTAGCTACTGCAAAAGATTTACCTATTGGGAAAGCTCCGGTCCCTTCGGTTGATCCTGACACTAAGAAAAAGGTGGAAAGGGCTCTATCAAATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAACTCTAACAAGAAAGTAGGGAAAGATAAGTATAGGTTAGTGGAGCTTGCAAACGAGTTCAGTCGATGCATGGGGCTTGATAGCCCTCCAGCTATTCCTAAGCTTGTCCTTGGCAAGATGGGTCTTAAAAATATCCCTGGTTTACGTTCCAAATAG 2052 0.4454 MPSKLFLSQMRLLHSPFLSQSLIKLSHLPLRNAAFRPRTFSVRPDRIRASKSLVDDEAELSNWVDDLRTGRETPETTRPGSGPGKDSGFRSRKSSAVSRGSGLGERRGGDFRKGKPSLNSKRRFPVRSDSSDVEDEVVDVGKFKGGGGGSGSIGRFISEEETEDEIEGEESDEEIVEKSRSVLFGKKVSGLSTTTTTTTTRPASSGGSDSYLSESRFDQCSVSPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEIVVKSPPSDRDQRRPPIFILVICPTRELACQAAAEATKLLKYHPTLGVQVVIGGTRLTLEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAIPKQRQTLMFSATIPDEVRQVCHIAMKRDFEYINTVQEGSEDTHAQVRQMHLVAPLEKHFPLLYAILKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLATAKDLPIGKAPVPSVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRCMGLDSPPAIPKLVLGKMGLKNIPGLRSK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04239 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 583 IPR027417 -
Vivi7g04239 683 Gene3D - 439 660 IPR027417 -
Vivi7g04239 683 Pfam DEAD/DEAH box helicase 240 417 IPR011545 GO:0003676|GO:0005524
Vivi7g04239 683 MobiDBLite consensus disorder prediction 65 172 - -
Vivi7g04239 683 Pfam Helicase conserved C-terminal domain 463 568 IPR001650 -
Vivi7g04239 683 Gene3D - 187 430 IPR027417 -
Vivi7g04239 683 SMART helicmild6 487 568 IPR001650 -
Vivi7g04239 683 MobiDBLite consensus disorder prediction 125 141 - -
Vivi7g04239 683 SMART ultradead3 234 447 IPR014001 -
Vivi7g04239 683 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 215 243 IPR014014 GO:0003724
Vivi7g04239 683 PANTHER RNA HELICASE 180 612 - -
Vivi7g04239 683 CDD DEADc_MSS116 222 431 - -
Vivi7g04239 683 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 429 IPR014001 -
Vivi7g04239 683 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 614 IPR001650 -
Vivi7g04239 683 CDD SF2_C_DEAD 444 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04239 Vivi-Chr7 110731795 110736931 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04239 215 596 Eukaryotic Initiation Factors Gene Family AT3G19760 28.133 9.15e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04239 - - gmx:100795739 947.577