Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04236 ATGATGAGTCCAAAGGAAAAGAAACTTGTGAGGTTTGTGAGAAAATCTAAACCAAGTATTAGTCCTGCGAAAAACAATGAACCGTCGAAAAAACCAGCTTCTTGGTGGAGTGTACTTGATCCACAAGGTCCACTGCTTCAAAAATGGAACAAGATCTTTGTGATAACATGTGTCATGGCAGTGTCGATGGATCCGCTGTTCTTTTACATCCCTGTGATTGATGATGAGAAAAAGTGCCTTGGTTTGAGTGGAACATTGAAGATTACTGCGAGTGTTCTTCGCACGTTTTTCGATCTTTTCTACATTCTTCGTATAGTGTTTCAGTTTCGAACTGGGTTTATTGCTCCTTCTTCGAGCGCATTTGGAAGGGGCGAGCACGTTGTTGATCCTTGGGCTATAGCAGTGAGATACTTGAGTTCTCATTTCATCATTGATATTCTATCAATTCTTCCACTTCCCCAGATGGTGATTTTGGCTATGATTCCAATTCCACAATGTTCAGTTCCATATAGAGCAAAGGAATGGTTGAAGTACACAATAATAACACAGTATGCGCCGAGACTTTTGCGAATCTATCCGCTGTTCAAAGAAGTAACAAGCACTTCTGGTATACTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTGGTTGGAGCTTTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGGTGTTGGCGCAAACGGTTGAGGAATACTGGACTTTTTGATGATTCCTATTTGAGCTGTGGATGGGTTAATGCGACAGTTTTATCGCTTCTCAGCAACTCTACTACTTGTCCTTTCAAAGAACCTGATGATATCATTGATCCAACAGTTTTTGATTTTGGAATATTTATAGATGGTCTAAAGTCTCGTGTCGTCAGTTCGACTACAGACTTTCGTCATAAGTTCTTCTACTGTTTTTGGTGGGGTTTCCGCAATTTAAGTTCTGTTGGACAGAACTTGAAAACAAGCACTTATATTGGGGAGATAATCTTCGCGATCTTCATCGCCGTCTATGGATTGGTTCTATTCGCATTTCTAATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAGTCAAGAGGAGGGATGCTGAACATTGGATGCGCCACCGTAAGCTACCGGAGCACATGAAGAAAAGAATTCGACGGTATGAACAATACAAATGGCAAGAAAATCGAGGTGTTGAAGAGGAGAGGTTGATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTGCTTAAAAAAGTGCCAATTTTTGGCAAAATGGATAAACAGTTGCTGGATGCAATGTATGATAAACTCAAACCAGTCCTTTACACCGAGAAAAGTTATGTTGTTCGCGAAGGTGATCCGGTGGACGAAATGCTCTTCATCATGCGCGGAAAACTTGCGACCACAACCGGTATCTTTAACTCGTGGGAGCTTAAGTCTGGTGATTTTTGTGGAGAGGAGCTTCTAACATGGGCATGGGATCCTACCACTTCCTCTAACTTACCTATTTCAACTAGCACTGTGGAAACTCTTTCAGATGTTGAAGCTTTTGCTATCATGCCTGATGACTTGAAGATTCTTGCTTTTCAATTTCGCCGTCTTATTAGCAGAAAACAAATTCAGCACAATTTTAGGTGTTGTTCATTGCAATGGAGGGCATGGGGAGCGCGGTTCATACAAGTAATATGGCGTCGATATAAAGAAAAAAAGGCTCAGAAAGCATTGCGTGAAGCGGAAGGACAACAAAATGCTTGTGAAAATGAGAAAGAGTGTTCACCAAGCTTTGTTGCCACCATGTATGTACGAAAGTTTGCATCTAATGCATTAAGGCATATAAGAAGTGGCAAAAGAGTGACGGAGACGCAGACGCAGACAAATAGATTGCTACCACTCATGCCTAAGAAACCAGCTGAGCCAGATTTCATTACTCAAAAGTAG 2013 0.4103 MMSPKEKKLVRFVRKSKPSISPAKNNEPSKKPASWWSVLDPQGPLLQKWNKIFVITCVMAVSMDPLFFYIPVIDDEKKCLGLSGTLKITASVLRTFFDLFYILRIVFQFRTGFIAPSSSAFGRGEHVVDPWAIAVRYLSSHFIIDILSILPLPQMVILAMIPIPQCSVPYRAKEWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRKRLRNTGLFDDSYLSCGWVNATVLSLLSNSTTCPFKEPDDIIDPTVFDFGIFIDGLKSRVVSSTTDFRHKFFYCFWWGFRNLSSVGQNLKTSTYIGEIIFAIFIAVYGLVLFAFLIGNMQKYLQSTTVRVEEMRVKRRDAEHWMRHRKLPEHMKKRIRRYEQYKWQENRGVEEERLIRNLPKDLRRDIKRHLCLDLLKKVPIFGKMDKQLLDAMYDKLKPVLYTEKSYVVREGDPVDEMLFIMRGKLATTTGIFNSWELKSGDFCGEELLTWAWDPTTSSNLPISTSTVETLSDVEAFAIMPDDLKILAFQFRRLISRKQIQHNFRCCSLQWRAWGARFIQVIWRRYKEKKAQKALREAEGQQNACENEKECSPSFVATMYVRKFASNALRHIRSGKRVTETQTQTNRLLPLMPKKPAEPDFITQK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04236 670 Gene3D Helix hairpin bin 373 437 - -
Vivi7g04236 670 Gene3D Jelly Rolls 444 558 IPR014710 -
Vivi7g04236 670 Gene3D - 51 370 - -
Vivi7g04236 670 SMART cnmp_10 446 571 IPR000595 -
Vivi7g04236 670 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 666 - -
Vivi7g04236 670 FunFam Cyclic nucleotide-gated ion channel 1 373 437 - -
Vivi7g04236 670 Pfam Ion transport protein 49 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi7g04236 670 Coils Coil 593 613 - -
Vivi7g04236 670 CDD CAP_ED 446 562 IPR000595 -
Vivi7g04236 670 MobiDBLite consensus disorder prediction 1 33 - -
Vivi7g04236 670 SUPERFAMILY Voltage-gated potassium channels 40 368 - -
Vivi7g04236 670 SUPERFAMILY cAMP-binding domain-like 375 556 IPR018490 -
Vivi7g04236 670 ProSiteProfiles cAMP/cGMP binding motif profile. 446 524 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04236 Vivi-Chr7 110622773 110626318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04236 29 666 Ion Channels AT5G53130 62.906 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04236 K05391 - gmx:100795201 964.911