Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04235 ATGATGAGTCCAAAGGAAAAGAAATTTGTGAGATTTGAAGATTGGAAATCAGAATCATCATCTTTTAATATTTCACAATATGAGTCTTCAATTGATGGATTTGAAAAAAGAAAATCTAAACCAAGTTTTAGTCCTGCGAAAAACAATGAACTGTCGGAAAAACCAGCTTCTTGGTGGAGTGTACTTGATCCACAAGGTCCACTGCTTCAAAAATGGAACAAGATCTTTGTCATAACATGTGTCATGGCAGTGTCGATGGATCCGCTGTTCTTTTACATCCCTGTGATTGATGATGAGAAAAAGTGTCTTGGTATGAGTGGAACACTGAAGATTACTGCGAGTGTTCTTCGCACGTTTTTCGATCTTTTCTACATTCTTCGGATAGTGTTTCAGTTTCGAACCGGGTTTATTATTCCTTCTTCGCGCGTGTTTGGAAGGGGCGAGCACGTTGTTGATCCTTGGGCTATAGCAGTTAGATACTTGAGTTCTCATTTCATCCTTGATATTCTATCAATTCTTCCACTTCCTCAGATGGTGATTTTGGCTATGATTCCAATTAGACAATGCTCAGTTCCATATATAGCAAAGGATTGGTTGAAGTATACAATAATAACACAGTACGCGCCGAGACTTTTGCGAATCTATCCGTTGTTCAAAGAAGTAACAAGCACTTCTGGTATACTGACTGAGACAGCATGGGCAGGAGCTGCTTACAATCTTTTTCTTTATATGCTAGCAAGTCATGTGGTTGGAGCTTTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGGTGTTGGCGCAGACGATTGAAGAATACTGGATTTTCTTATAATCCCTCCTACTTGAGCTGTGACCGGGTTAATTCGACTGTTTTTTTGCTTCTCAGCAACTCTACTATTTGTCCTTTCAAAGAACCTGATGATATCATTGATCCAACAGTTTTTGATTTTGGAATATTTATAGATGGTCTAAAGTCTGGTGTCGTCAGTTCGACTACAGACTTTCATCATAAATTCTTCTACTGTTTTTGGTGGGGTTTGCGCAATTTAAGTTCTGTTGGGCAGAACCTGAAGACAAGCACTTATATTGGGGAGATAATCTTTGCGATCTTCATCGCCGTCTTTGGATTGGTTCTATTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCGGAGTACATGAAGCAAAGAATTCGACGGTATGAGCAATACAAATGGCAAGAAAATCGAGGTGTTGAAGAGGAGACGTTGATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTGCTTAAAAAGGTGCCGATTTTTGGAAACATGGATAAACAGTTGCTGGATGCAATGTGTGATAAACTCAAACCAGTCCTTTATACTGAGAAAAGTTACGTTGTTCGCGAAGGTGATCCGGTGGACGAAATGCTCTTCATCATGCGCGGAAAACTTGCGACCGCCACAACAAATGGTGGAAGGACCGGTTTCTTTAACTCGTCGGAGCTCAAGTCTGGTGATTTTTGTGGGGAGGAGCTTCTAACATGGGCATTGGATCCTACCACTTCCTCTAACTTACCTATTTCAACTAGTACTGTGGAAACTCTTTCAGAAGTTGAAGCTTTTGCTCTCATGCATGATGACTTGAAGATCGTTGCTTCTCAATTTCGCCGTCTTATTAACAGAAAACAACTCCAACACACTTTCAGGTTCTATTCATTGCAATGGAGGACATGGGGAGCGCGGTTCATACAAGTAATATGGCGTCGATATAGAGAAAAAAGGGCTCAGAAAGCATTGCGTGAAGCAGAAGAAGGACAACAAATTGCTTGTGAAAATGAGGAAGAGTGTTCACCAAGCTTTGTTTCCACCATGTATGTAAGAAAATTTGCATCTAATGCATTAAGGAATGTAAGAAGTGGCAAAAGAGTGACGGAGACGCAGCCGCAGACAAAAAGATTGCTACCACTCTTGCCTAAGAAACCAGCTGAGCCAGATTTCATTACTCAAAAGTAG 2106 0.4046 MMSPKEKKFVRFEDWKSESSSFNISQYESSIDGFEKRKSKPSFSPAKNNELSEKPASWWSVLDPQGPLLQKWNKIFVITCVMAVSMDPLFFYIPVIDDEKKCLGMSGTLKITASVLRTFFDLFYILRIVFQFRTGFIIPSSRVFGRGEHVVDPWAIAVRYLSSHFILDILSILPLPQMVILAMIPIRQCSVPYIAKDWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRRLKNTGFSYNPSYLSCDRVNSTVFLLLSNSTICPFKEPDDIIDPTVFDFGIFIDGLKSGVVSSTTDFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPEYMKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPIFGNMDKQLLDAMCDKLKPVLYTEKSYVVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSELKSGDFCGEELLTWALDPTTSSNLPISTSTVETLSEVEAFALMHDDLKIVASQFRRLINRKQLQHTFRFYSLQWRTWGARFIQVIWRRYREKRAQKALREAEEGQQIACENEEECSPSFVSTMYVRKFASNALRNVRSGKRVTETQPQTKRLLPLLPKKPAEPDFITQK 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04235 701 Gene3D Helix hairpin bin 397 461 - -
Vivi7g04235 701 CDD CAP_ED 470 602 IPR000595 -
Vivi7g04235 701 FunFam Cyclic nucleotide-gated ion channel 1 397 461 - -
Vivi7g04235 701 SUPERFAMILY cAMP-binding domain-like 399 588 IPR018490 -
Vivi7g04235 701 Pfam Cyclic nucleotide-binding domain 490 580 IPR000595 -
Vivi7g04235 701 Gene3D - 74 394 - -
Vivi7g04235 701 ProSiteProfiles cAMP/cGMP binding motif profile. 470 554 IPR000595 -
Vivi7g04235 701 Gene3D Jelly Rolls 468 588 IPR014710 -
Vivi7g04235 701 Pfam Ion transport protein 72 398 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi7g04235 701 MobiDBLite consensus disorder prediction 31 50 - -
Vivi7g04235 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 697 - -
Vivi7g04235 701 FunFam Cyclic nucleotide-gated ion channel 1 468 586 - -
Vivi7g04235 701 SUPERFAMILY Voltage-gated potassium channels 63 392 - -
Vivi7g04235 701 SMART cnmp_10 470 601 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04235 Vivi-Chr7 110614588 110618246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04235 10 697 Ion Channels AT4G01010 61.072 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04235 K05391 - gmx:100795201 1035.4