Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04227 ATGATTTGTTTCCTCATTCAACGCCTCTACAGCTTCATGTGCATCAGCCCACACTTAATTTCAGGATTTGCTTTTGTTTACTATGAAGATGAGCGTGACGCTGAAGAAGCAATTCGTGCCCTTGACAACATTCCATTTGGTTATGATAAGCGACGACTATCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGCTCAAAGGCAAACCAGAAGCCCACAAAAACTCTATTTGTGATTAACTTTGACCCGATTCGCACTAGAGTCAGTGATATAGAGAGACACTTTAAGCCTTATGGACAGCTTCATCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTATGAAACACAAGAAGATGCCACTAAAGCCTTAGAGTGTACACATATGAGTAAGATACTGGACAGGGTGGTCTCTGTGGAGTATGCTCTGAGGGATGATAGTGAGAGGGTTGACAGTTATAGCAGTCCCAGAAGAGGAGGAGGTCTTGCTAGATCTCCCAGTCCAGCTTATCGCAGGCGACCAAGTCCTGACTATGGCCGTCCACGTAGTCCTGTGTATGACAGGTATAGTGGACCAGACAGGCGGAGGAGTCCTGATTATGGAAGGAACAGGAGTCCTGATTATGGCAGGAACAGGAGTCCTGAATACGGCAGATACCGCAGTCGTTCACCAGTCCGAAGGTCGAGAACTTAA 705 0.4709 MICFLIQRLYSFMCISPHLISGFAFVYYEDERDAEEAIRALDNIPFGYDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVSDIERHFKPYGQLHHVRIRRNFAFVQYETQEDATKALECTHMSKILDRVVSVEYALRDDSERVDSYSSPRRGGGLARSPSPAYRRRPSPDYGRPRSPVYDRYSGPDRRRSPDYGRNRSPDYGRNRSPEYGRYRSRSPVRRSRT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04227 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 148 IPR000504 GO:0003723
Vivi7g04227 234 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 92 - -
Vivi7g04227 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 60 IPR000504 GO:0003723
Vivi7g04227 234 SUPERFAMILY RNA-binding domain, RBD 21 151 IPR035979 GO:0003676
Vivi7g04227 234 SMART rrm1_1 78 144 IPR000504 GO:0003723
Vivi7g04227 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 46 IPR000504 GO:0003723
Vivi7g04227 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 141 IPR000504 GO:0003723
Vivi7g04227 234 MobiDBLite consensus disorder prediction 151 234 - -
Vivi7g04227 234 MobiDBLite consensus disorder prediction 191 226 - -
Vivi7g04227 234 Gene3D - 72 157 IPR012677 -
Vivi7g04227 234 FunFam Serine/arginine-rich splicing factor RS31 69 159 - -
Vivi7g04227 234 Gene3D - 17 71 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04227 Vivi-Chr7 110491112 110492803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04227 22 150 Eukaryotic Initiation Factors Gene Family AT1G49760 24.476 2.63e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04227 K12893 - gmx:100801043 341.658