Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04210 ATGTTTGAATTAGAGACTATGGAATATGGTCAATATAGTAGCTATTCAGCAGAAGCAGCAGCAGAGGAAGAAGCTTATGCAACCAGCAGCACATCTTCCATGGCAAGAAAGAAGAAAAACAAGAATACAAAAAGGTTTAGTGATGAACAAATCAAATCATTGGAAACTATGTTTGAGACTGAGACAAGACTTGAACCAAGGAAGAAGCTGCAGCTGGCTAGAGAGCTTGGGTTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAATAAGAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAGTACAATAAACTTCAAAATAGTTATAATAGTTTGGCTTCAAGATTTGAATCAATGAAGAAGGAAAAACAAACATTACTTATTCAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCAATAATAGAGCAAAGTCAGAGTTCATCACAAGTTAAAGAAACAAACAGTATGGAAAGTGAATCAGAAAACGGAGGAACAATCAAATGTGAGGCTGAGGTGAAACCAAGAACTTCAATGGAAAGATCAGAACATGTTTTTGATGTTGTATCAGATGATGACACAAGCATAAAAGTTGAGTATTTTGGGCTAGAAGATGAGCATGGGCTTATGAATTTTGCTGAACATGGTGATGGATCATTAACTTCACCTGAAAATTGGAGTGGTTTTGAAACAAATGATTTGTTAGGAGAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTGA 753 0.3625 MFELETMEYGQYSSYSAEAAAEEEAYATSSTSSMARKKKNKNTKRFSDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNSLASRFESMKKEKQTLLIQLQKLNDLIQKPIIEQSQSSSQVKETNSMESESENGGTIKCEAEVKPRTSMERSEHVFDVVSDDDTSIKVEYFGLEDEHGLMNFAEHGDGSLTSPENWSGFETNDLLGESSCDYQWWDFWS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04210 250 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Vivi7g04210 250 Pfam Homeodomain 44 95 IPR001356 GO:0003677
Vivi7g04210 250 CDD homeodomain 46 98 IPR001356 GO:0003677
Vivi7g04210 250 SMART HOX_1 37 101 IPR001356 GO:0003677
Vivi7g04210 250 MobiDBLite consensus disorder prediction 26 48 - -
Vivi7g04210 250 SUPERFAMILY Homeodomain-like 26 99 IPR009057 -
Vivi7g04210 250 MobiDBLite consensus disorder prediction 145 164 - -
Vivi7g04210 250 Coils Coil 89 137 - -
Vivi7g04210 250 Gene3D - 28 102 - -
Vivi7g04210 250 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
Vivi7g04210 250 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Vivi7g04210 250 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Vivi7g04210 250 MobiDBLite consensus disorder prediction 145 169 - -
Vivi7g04210 250 FunFam Homeobox-leucine zipper protein ATHB-7 25 97 - -
Vivi7g04210 250 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 33 181 IPR045224 GO:0003700
Vivi7g04210 250 Pfam Homeobox associated leucine zipper 97 138 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04210 Vivi-Chr7 110043829 110045180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04210 8 250 Homeobox Transcription Factor Family AT2G46680 49.042 2.61e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi7g04210 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04210 K09338 - gmx:100811208 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04210 7 110043829 110045180 Vivi7g04210 7 110043829 110045180 ECH