Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04198 ATGGAAGACTTCATCATCTCACCTTCATCATCTTCTTCTATCATACAAAACCCTTTACCACAAACATCAACCCTTCAACAAAAGCTTCAATTTCTACTCCAATCTCAATCCGACAATTGGGTCTATGCCATTTTGTGGCAAACAACAAAAGATGAAAAAGGTAACCCTTTCTTATCTTGGGGTGAAGGTCATTTCCAAGGAAACAAAAAAACAACAACCTCAAACAAAGTATACAACACGGACACAAACACAGACACAGACACGAAGACATGTACAAACGGCGATGCGGAATGGTTCTACGTCATGTCGTTGACTCGAAGCTTTTCCGTCGGTAATTCCTCTTCCATTTCTTTACCTGGTAAATCTTTTGCCTTAGATTCTGTTCTTTGGTTGAATAGCAAACAAGAGCTTCAATTTTATAATTGTGAGAGATCCAATGAAGCACACGTGCACGGAATCGAAACGTTGATTTGTGTTCCAACAACTAACGGCGTTGTCGAAATGGGCTCCTACGAAAATATCCAACAAAATTGGAACCTCGTACATCAAGCCAAATCCATGTTCCAATCATCCTCGTCAGAATCAAACTTAGATCTTCCTCCCACCAAACCACTTGACAAAGTCCAAACTTTCGACCAAAACATCTCATTCTCCGACATCGGTATCATCTCCGGCACCGGCGAAGAAACCGAGGAGACACAAAAAACAATGAACAAAAAACCACAAAAAAAACACATCATTGTTTCACCATGTTACATAGATTCTGAACATTCGGATTCAGAATATTGTCCACAATTAACAACACCAACAACAACGACAACAACAACACCGAAGAAGCGAGGGAGAAAACCGTTATCCGGAACACTAATTCCGATCAACCATGTAGAAGCAGAGAGACAAAGGAGAGAGAAACTCAACCATAGATTCTACGCTCTAAGAGCCGTCGTTCCAAACGTTTCAAGGATGGATAAAGCTTCATTGTTATCAGATGCAGTGGATTACATCAACGAGTTAAAAGCGAAGATCGAAGAGTTGGAATTAGAATCAGATAATCAGAAGGAACCAAAGAAACCGAAGATGGAAACAATTGAAAGTACTATAACAGCAACTTCAACTGTGGTGGACCAAAAAAAACCTTGTAGTAGTAATAATAATGATAACAACAATGTTGTTGCTTTGGAAATTGATGTGAAGATTATAGGCAATGATGCAATGGTGAGAGTTCAATCTGAGAATGTTAATCATCCTGGTGCTAGGTTAATGAGTGTGTTTAAGGATTTGGAGTTTCAGGTTCATCATGCTAGTATATCATGTTTCAATGAAATTATGGTTCAAGATGTTGTGGTTGTTCAAGTTCCTGATGAGATGAGAAATGAAGAGAGTCTTAGATCTGCGATTCGAATGAGATTGGAACATGAATGA 1422 0.3903 MEDFIISPSSSSSIIQNPLPQTSTLQQKLQFLLQSQSDNWVYAILWQTTKDEKGNPFLSWGEGHFQGNKKTTTSNKVYNTDTNTDTDTKTCTNGDAEWFYVMSLTRSFSVGNSSSISLPGKSFALDSVLWLNSKQELQFYNCERSNEAHVHGIETLICVPTTNGVVEMGSYENIQQNWNLVHQAKSMFQSSSSESNLDLPPTKPLDKVQTFDQNISFSDIGIISGTGEETEETQKTMNKKPQKKHIIVSPCYIDSEHSDSEYCPQLTTPTTTTTTTPKKRGRKPLSGTLIPINHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKAKIEELELESDNQKEPKKPKMETIESTITATSTVVDQKKPCSSNNNDNNNVVALEIDVKIIGNDAMVRVQSENVNHPGARLMSVFKDLEFQVHHASISCFNEIMVQDVVVVQVPDEMRNEESLRSAIRMRLEHE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04198 473 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 188 IPR025610 -
Vivi7g04198 473 MobiDBLite consensus disorder prediction 263 286 - -
Vivi7g04198 473 Pfam Helix-loop-helix DNA-binding domain 293 338 IPR011598 GO:0046983
Vivi7g04198 473 PANTHER MYC 14 467 IPR045084 GO:0003700|GO:0006355
Vivi7g04198 473 MobiDBLite consensus disorder prediction 263 281 - -
Vivi7g04198 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Vivi7g04198 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 352 IPR036638 GO:0046983
Vivi7g04198 473 Gene3D - 292 354 IPR036638 GO:0046983
Vivi7g04198 473 SMART finulus 295 344 IPR011598 GO:0046983
Vivi7g04198 473 Coils Coil 328 355 - -
Vivi7g04198 473 Coils Coil 467 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04198 Vivi-Chr7 109733898 109735792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04198 1 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 31.560 9.14e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g04198 bHLH-MYC_N 1.4e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04198 - K13422 gmx:100795733 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04198 7 109733898 109735792 Vivi7g04198 7 109733898 109735792 ECH