Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04190 ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTCCCTCCTGGATTCAGGTTTCATCCAACTGAAGAAGAACTTCTTCAATACTATTTGAGGAAAAAAGTCTCTTATGAGAAGATTGATCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATACAAGAGAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTACTTCTTCAGTCACAAAGATAAGAAGTATCCAACCGGGACGCGAACCAATCGCGCCACGGCTGCTGGGTTTTGGAAAGCCACGGGGCGCGACAAAGTTATATATAGCAATGGAAAAAGGATTGGAATGAGAAAGACTCTTGTTTTTTACAAGGGTCGCGCCCCTCATGGCCAAAAATCCGATTGGATCATGCACGAATATAGACTAGACGATAACACCACCACCAGCGACGCTAATTTGGTGTCGAATGTGATTGGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAATAAGAAGAATCATCTCAAAACCCTAGACAGCCCATTAGGCTCTGGAGAGGGAAGAAGAAGCCATCATTTGTTTGATAATTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGAGGTGGTTGCAAGGAAGAGAATTATGAAGCAAATTACAATAACAATAATTATGGAAGGTTTACAAGGCCTTTTGAAACTAGCCTCAACAACAATGGTGGTTATAACAATGAAAGGTTCATGAAACTTCCAAGTTTAGAGAGTCCAAAATCGACAAGCATGGAGAACAATGAGAACAACAATGAAGGGTACCATGCAATTATTCAAGTGGATGTGGCTAATGAAAATGAAGGGTCATTCACTAATCATCATCATCATCAACCCCATAACAACATGGTTAATAATCCATTAGAAGCATCATCATCATCAATGGTTATAGCCTCATGTGGTGATGGTGGTCTTACTAATTGGGTAGCTTTTGATAGGCTTGTTGCTTCTCAATTGAATGGACAAACTGAAACTTCTAGGCAATTGGCTTGCTTCAATGACCCCACAATGGGATATTGCACTAATGATCATGATCTTCAACTTCCAACCCTTAGATCTTCCTCATCAACTTCATCTCTATCGACACACGCTAGAGCTACTACTTCTACTACCGCTACTACTACTACTTACATTAGTCCCTCGCATGATTATGCGAGTGAGATTGATCTTTGGAACTTCGCCCGATCAACTTCTTCATTGTTGTCATCTTCTGAACCACTTTGCCATGTCTCAAATACGTCAGCGTGA 1320 0.4068 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTTSDANLVSNVIGDGGQEEGWVVCRIFNKKNHLKTLDSPLGSGEGRRSHHLFDNCDEGALEQILQQMGRGGCKEENYEANYNNNNYGRFTRPFETSLNNNGGYNNERFMKLPSLESPKSTSMENNENNNEGYHAIIQVDVANENEGSFTNHHHHQPHNNMVNNPLEASSSSMVIASCGDGGLTNWVAFDRLVASQLNGQTETSRQLACFNDPTMGYCTNDHDLQLPTLRSSSSTSSLSTHARATTSTTATTTTYISPSHDYASEIDLWNFARSTSSLLSSSEPLCHVSNTSA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04190 439 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Vivi7g04190 439 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Vivi7g04190 439 FunFam NAC domain-containing protein 24 180 - -
Vivi7g04190 439 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Vivi7g04190 439 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Vivi7g04190 439 MobiDBLite consensus disorder prediction 376 395 - -
Vivi7g04190 439 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04190 Vivi-Chr7 109508151 109510128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04190 1 439 NAC Transcription Factor Family AT2G46770 53.097 7.02e-136 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi7g04190 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04190 - - ahf:112734309 600.897