Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04183 ATGTCGATCGGAGAGGTTGCTTGCAGCTACTCGCTTATGATCCTTCATGATGATAACATCGCAGTCACTGGTGAGAAAATCTCAACATTGTTGAAAGCTGCAAAGGTTGATGTTGAATCTTATTGGCCAAACTTGTTTGCCAAGCTTGCCGAGAAGAAAAACCTTGATGATTTGATTTTGAATGCTGCGGGAGGTGGGGCTCCTGCTTCTGTTTCAGCCCCAGTTGCTGCTGCTTCTGCCACGACAGCTGCCGCTCCAACTGAGGAGAAGAAGGAAGAACCAAAGGAAGAAAGTGATGATGACATGGGATTCAGCTTGTTTGATTAG 327 0.4618 MSIGEVACSYSLMILHDDNIAVTGEKISTLLKAAKVDVESYWPNLFAKLAEKKNLDDLILNAAGGGAPASVSAPVAAASATTAAAPTEEKKEEPKEESDDDMGFSLFD 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04183 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 108 - -
Vivi7g04183 108 Pfam 60s Acidic ribosomal protein 22 107 - -
Vivi7g04183 108 CDD Ribosomal_P1 5 107 - -
Vivi7g04183 108 Gene3D - 1 62 IPR038716 -
Vivi7g04183 108 MobiDBLite consensus disorder prediction 86 102 - -
Vivi7g04183 108 FunFam 60S acidic ribosomal protein P1 1 63 - -
Vivi7g04183 108 Hamap 50S ribosomal protein L12 [rpl12]. 6 108 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vivi7g04183 108 MobiDBLite consensus disorder prediction 78 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04183 Vivi-Chr7 109286716 109288001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04183 1 108 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 54.054 5.57e-37 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04183 K02942 - mnt:21402570 122.864