Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04176 ATGTCTTCTCACGATTCACGTAGCATGGTAATGAACTGCATGTGCAAAGGTGCAGCTGATTTTCTAATCAAACCTGTTCGGAAGAATGAGCTTACGAACTTATGGCAGCATGTTTGGAGAAAGCATGTTTTTAACAGGCCTCTCCAAGATACATCTGCACAAGATAAACTTAAAATTGCCATAGAAGACAGTTTTACTGGCAATCAATCGACTGATTCTGTTTCTGTGACTTCCTCACAGAAAAATAATGAATGCAGTGAGAAACTGAGCGAGGCTCAAGTAACAAAACTTGAAAGGGAATCAACTAAGCTTAATGTTGAAGCAAGAGACTCAAGGCTAGAACAAGACTACAGTACTTCTGAAGTTGAATCGAAAAATGAAATATTTAGAGCTGACTTAAGCAGAGAGAACCGCGATACTGATAATGATACTGCGATGCGTGGATGCAGTGATGAACTTATAGAACCTTCTAGCGAAGCTATTGACTTGATTTCCACAGTTGGGAATCTCCGCAAGTGCACAAAGGAAATCCATTGCGTTAATGGCGATAAAGAAACCAAGTTTGATTTTGAAAAAGATTTGGAGCTGTCTTTAAGAAGTGGTTTTTCAGGCAGCTCATGCAAACAAGCAAGTGAAGCCACTGAGGAATGGCAAAGATTGAACCACTCAAATACTTCTACTTTTTCCCAGTTTGATGGTAGTAAGATGTTGTGGCCACTTTTTCAAAACCCCAATTGGAGCTCTAATAAATCTAATGAATTATCAGTAGTTGCTGTTGATAATTGCATTCAATACGGTGGCCCGATTAAAATAGAAGACATGACTAACGCAGTCACGGCTCATTACGGACAATTTGGACCAAAATTATTTAACACTGGACTCTTAGCTGATAATGTTCTTCATCACATGCGGATTCCTAAATCAAATTTCCAAAAAGAGAGCTCTCCCTTTCCCTCTAGTTCCTCTTCCCAGTCAAATCCTGAAAGTCACAATTCAGACCATCATCATAATTGCTCTTATGATGCTAACTACAGTTTTCTTAATCAAAGTGTTACTGAAAAATATGATTTGGATCATGTAGTGCATGATTCTCCTAGTGTTGGTTCAGGATTCGGCGATGACATTTGCCAAGCTTCAAATTATATTAATAGTGGCAATGATGAAAGAGCTACTTCAAATGTGGTTACAAAGAATTCAAGAAGTTCTAATGATTGTAGGCGCAACAGAAAAGATAGTTATGATTATGATGATGATGAATTTAGATTGAGTGATTCTCATCGCTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTTCGTTTAAAGCGAAAAGAGAGATGCTTCGCGAAAAAGGTTCGGTATCAGAGCCGGAAAAAAATCGCAGAGCAGCGCCTTCGGGTGAAAGGGCAGTTCGTACGTAGAGCACAGGATGATGATGATCATCCAAATGCAGATGCTAACGGTGATCAATGA 1470 0.3912 MSSHDSRSMVMNCMCKGAADFLIKPVRKNELTNLWQHVWRKHVFNRPLQDTSAQDKLKIAIEDSFTGNQSTDSVSVTSSQKNNECSEKLSEAQVTKLERESTKLNVEARDSRLEQDYSTSEVESKNEIFRADLSRENRDTDNDTAMRGCSDELIEPSSEAIDLISTVGNLRKCTKEIHCVNGDKETKFDFEKDLELSLRSGFSGSSCKQASEATEEWQRLNHSNTSTFSQFDGSKMLWPLFQNPNWSSNKSNELSVVAVDNCIQYGGPIKIEDMTNAVTAHYGQFGPKLFNTGLLADNVLHHMRIPKSNFQKESSPFPSSSSSQSNPESHNSDHHHNCSYDANYSFLNQSVTEKYDLDHVVHDSPSVGSGFGDDICQASNYINSGNDERATSNVVTKNSRSSNDCRRNRKDSYDYDDDEFRLSDSHRSSQREAALTKFRLKRKERCFAKKVRYQSRKKIAEQRLRVKGQFVRRAQDDDDHPNADANGDQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04176 489 Gene3D - 1 162 - -
Vivi7g04176 489 SUPERFAMILY CheY-like 1 54 IPR011006 -
Vivi7g04176 489 ProSiteProfiles CCT domain profile. 431 473 IPR010402 GO:0005515
Vivi7g04176 489 Pfam CCT motif 431 473 IPR010402 GO:0005515
Vivi7g04176 489 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 139 478 IPR045281 GO:0009909
Vivi7g04176 489 MobiDBLite consensus disorder prediction 386 416 - -
Vivi7g04176 489 MobiDBLite consensus disorder prediction 386 401 - -
Vivi7g04176 489 MobiDBLite consensus disorder prediction 309 328 - -
Vivi7g04176 489 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160
Vivi7g04176 489 MobiDBLite consensus disorder prediction 68 92 - -
Vivi7g04176 489 MobiDBLite consensus disorder prediction 309 335 - -
Vivi7g04176 489 MobiDBLite consensus disorder prediction 68 90 - -
Vivi7g04176 489 MobiDBLite consensus disorder prediction 402 416 - -
Vivi7g04176 489 MobiDBLite consensus disorder prediction 470 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04176 Vivi-Chr7 109228495 109232952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04176 422 479 Response Regulator Gene Family AT5G02810 73.770 5.90e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi7g04176 CCT 4.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04176 K12130 - gmx:100779346 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04176 7 109228495 109232952 Vivi7g04176 7 109228495 109232952 ECH