Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04175 ATGGATGAAGAAGTTGAATTAAACAGAAATATGAATGAATCAGAGAAGAAGAACGATGGTGATGATCACTGTAAAGAGGTTTTTCGATGGGAATTGTTTCTACCAAAGATAACTGTTACTGTTCTGCTTGTTGAATCCGATCGTTCTACTCGGCGGTTAATTACTTCACTTCTCATGAATTGCAATTACAAAGTTATTGCTGTTTCAGATGGAGTAAAGGCATGGAAGACTTTGCAAATGAAGGAAATTGATGTTGATATTGTATTAGCAGAAATGGAGTTGCCTGTAATATCTGGATTAGAGCTTCTTTCTTTGATGATGGAGCATGAAACTTGCAAAAACATTCCTCTTATAATGATGTCTTCTCACGATTCACGTAGCATGGTAATGAACTGCATGTGCAAAGGTGCAGCTGATTTTCTAATCAAACCTGTTCGGAAGAATGAGCTTACGAACTTATGGCAGCATGTTTGGAGAAAGCATGTTTTTAACAGGCCTCTCCAAGATACATCTGCACAAGATAAACTTAAAATTGCCATAGAAGACAGTTTTACTGGCAATCAATCGACTGATTCTGTTTCTGTGACTTCCTCACAGAAAAATAATGAATGCAGTGAGAAACTGAGCGAGGCTCAAGTAACAAAACTTGAAAGGGAATCAACTAAGCTTAATGTTGAAGCAAGAGACTCAAGGCTAGAACAAGACTACAGTACTTCTGAAGTTGAATCGAAAAATGAAATATTTAGAGCTGACTTAAGCAGAGAGAACCGCGATACTGATAATGATACTGCGATGCGTGGATGCAGTGATGAACTTATAGAACCTTCTAGCGAAGCTATTGACTTGATTTCCACAGTTGGGAATCTCCGCAAGTGCACAAAGGAAATCCATTGCGTTAATGGCGATAAAGAAACCAAGTTTGATTTTGAAAAAGATTTGGAGCTGTCTTTAAGAAGTGGTTTTTCAGGCAGCTCATGCAAACAAGCAAGTGAAGCCACTGAGGAATGGCAAAGATTGAACCACTCAAATACTTCTACTTTTTCCCAGTTTGATGGTAGTAAGATGTTGTGGCCACTTTTTCAAAACCCCAATTGGAGCTCTAATAAATCTAATGAATTATCAGTAGTTGCTGTTGATAATTGCATTCAATACGGTGGCCCGATTAAAATAGAAGACATGACTAACGCAGTCACGGCTCATTACGGACAATTTGGACCAAAATTATTTAACACTGGACTCTTAGCTGATAATGTTCTTCATCACATGCGGATTCCTAAATCAAATTTCCAAAAAGAGAGCTCTCCCTTTCCCTCTAGTTCCTCTTCCCAGTCAAATCCTGAAAGTCACAATTCAGACCATCATCATAATTGCTCTTATGATGCTAACTACAGTTTTCTTAATCAAAGTGTTACTGAAAAATATGATTTGGATCATGTAGTGCATGATTCTCCTAGTGTTGGTTCAGGATTCGGCGATGACATTTGCCAAGCTTCAAATTATATTAATAGTGGCAATGATGAAAGAGCTACTTCAAATGTGGTTACAAAGAATTCAAGAAGTTCTAATGATTGTAGGCGCAACAGAAAAGATAGTTATGATTATGATGATGATGAATTTAGATTGAGTGATTCTCATCGCTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTTCGTTTAAAGCGAAAAGAGAGATGCTTCGCGAAAAAGGTTCGGTATCAGAGCCGGAAAAAAATCGCAGAGCAGCGCCTTCGGGTGAAAGGGCAGTTCGTACGTAGAGCACAGGATGATGATGATCATCCAAATGCAGATGCTAACGGTGATCAATGA 1827 0.3837 MDEEVELNRNMNESEKKNDGDDHCKEVFRWELFLPKITVTVLLVESDRSTRRLITSLLMNCNYKVIAVSDGVKAWKTLQMKEIDVDIVLAEMELPVISGLELLSLMMEHETCKNIPLIMMSSHDSRSMVMNCMCKGAADFLIKPVRKNELTNLWQHVWRKHVFNRPLQDTSAQDKLKIAIEDSFTGNQSTDSVSVTSSQKNNECSEKLSEAQVTKLERESTKLNVEARDSRLEQDYSTSEVESKNEIFRADLSRENRDTDNDTAMRGCSDELIEPSSEAIDLISTVGNLRKCTKEIHCVNGDKETKFDFEKDLELSLRSGFSGSSCKQASEATEEWQRLNHSNTSTFSQFDGSKMLWPLFQNPNWSSNKSNELSVVAVDNCIQYGGPIKIEDMTNAVTAHYGQFGPKLFNTGLLADNVLHHMRIPKSNFQKESSPFPSSSSSQSNPESHNSDHHHNCSYDANYSFLNQSVTEKYDLDHVVHDSPSVGSGFGDDICQASNYINSGNDERATSNVVTKNSRSSNDCRRNRKDSYDYDDDEFRLSDSHRSSQREAALTKFRLKRKERCFAKKVRYQSRKKIAEQRLRVKGQFVRRAQDDDDHPNADANGDQ 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04175 608 SMART REC_2 39 154 IPR001789 GO:0000160
Vivi7g04175 608 MobiDBLite consensus disorder prediction 187 209 - -
Vivi7g04175 608 MobiDBLite consensus disorder prediction 1 20 - -
Vivi7g04175 608 MobiDBLite consensus disorder prediction 187 211 - -
Vivi7g04175 608 MobiDBLite consensus disorder prediction 505 535 - -
Vivi7g04175 608 MobiDBLite consensus disorder prediction 428 454 - -
Vivi7g04175 608 MobiDBLite consensus disorder prediction 428 447 - -
Vivi7g04175 608 MobiDBLite consensus disorder prediction 505 520 - -
Vivi7g04175 608 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 366 IPR045279 GO:0009736
Vivi7g04175 608 ProSiteProfiles CCT domain profile. 550 592 IPR010402 GO:0005515
Vivi7g04175 608 SUPERFAMILY CheY-like 40 173 IPR011006 -
Vivi7g04175 608 MobiDBLite consensus disorder prediction 521 535 - -
Vivi7g04175 608 Pfam Response regulator receiver domain 41 152 IPR001789 GO:0000160
Vivi7g04175 608 Pfam CCT motif 550 592 IPR010402 GO:0005515
Vivi7g04175 608 MobiDBLite consensus disorder prediction 589 608 - -
Vivi7g04175 608 Gene3D - 39 279 - -
Vivi7g04175 608 ProSiteProfiles Response regulatory domain profile. 40 158 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04175 Vivi-Chr7 109228495 109233501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04175 16 594 Response Regulator Gene Family AT5G24470 32.550 3.78e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi7g04175 Response_reg 3e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04175 K12130 - gmx:100779346 433.721