Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04166 ATGGAGAGGCTTCAAGCACCCATCAATTCTTCTTTCTTTGGTGAAGTGAATTGTTTAGACCAAACATTTCTTGACACAGAAAGTTTAAGATTTGAGGAAGATGAACAGTTTCTGATATCAAGCTTAGAAGACAACATGCCATTTCTTCAAATGCTTCAAAGTGTTGAATCTCCACAGTTGATATATCCTCTAAAAGAACCAAACTTTCAAACACTTTTGAGGCTACAACATATGAAGAAGCCATGGGAAGAAGACATAGCCTTTATTCCTAGGATGGATTCACATCAACAAGCTCAAACAACATTGGAATTTGAGAGCTGTGTTACACATGATGTTCTAGAGATGCAGTCACCAGTGAAATCAGAAAGCTATGAACTTCAACACAAAGTTTCAGCTTCATGCATTGAGAAATTGAGCTATGAGTGTAACCAAGAACAAACAAAAACATGTTCCAAATCTCAGCTTGTGACAAGAGAAAAGAGGAAGAGGAAAAGAACAAGACCGGTTAAGAATAAGGAAGATGTTGAGAATCAAAGGATGACACACATTGCTGTTGAAAGAAATAGGAGAAGACAAATGAATGACCATCTTAGTGTTCTTAGGTCTCTTATGCCATCTTCTTATATTCAAAGGGGTGACCAAGCATCAATAATTGGAGGGGCAATAGATTTTGTGAAGGAGTTAGAGCAATTGCTTGAATCTCTTGAAGTACAAAAAAGGTTAAAAAAGAATGAAGAATTTGGTTCAACCTCATCATCATCACCACCTAGTTATGAAACAAAGTTATCATGTTGTGAAGAAAATGAGGTGAAGGCAGAAAACAAATCAGAAGCAGCAGATATAAAAGTGACATTGATTCAAACTCATGTGAACTTGAAAATAGAGTGCAAAAGAAGATGTGGTCAATTGATAAAAGTTATTGTTGCTTTGGAGAATCTTAGGCTAACTATTCTTCACCTTAACATCACATCCTTTGAGTCTTCTGTACTTTACTCCCTCAATCTCAAGATTGAAGAAGATTGTAAGCTAGGCACAGCAAATGACATAGCAGAAGCAGTTCATGAAATATTCAACTATATTAATGGTAACTAG 1092 0.3599 MERLQAPINSSFFGEVNCLDQTFLDTESLRFEEDEQFLISSLEDNMPFLQMLQSVESPQLIYPLKEPNFQTLLRLQHMKKPWEEDIAFIPRMDSHQQAQTTLEFESCVTHDVLEMQSPVKSESYELQHKVSASCIEKLSYECNQEQTKTCSKSQLVTREKRKRKRTRPVKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDFVKELEQLLESLEVQKRLKKNEEFGSTSSSSPPSYETKLSCCEENEVKAENKSEAADIKVTLIQTHVNLKIECKRRCGQLIKVIVALENLRLTILHLNITSFESSVLYSLNLKIEEDCKLGTANDIAEAVHEIFNYINGN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04166 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 245 IPR036638 GO:0046983
Vivi7g04166 363 Pfam Helix-loop-helix DNA-binding domain 178 229 IPR011598 GO:0046983
Vivi7g04166 363 SMART finulus 183 234 IPR011598 GO:0046983
Vivi7g04166 363 PANTHER TRANSCRIPTION FACTOR FAMA 106 357 IPR044283 GO:0003700|GO:0010052
Vivi7g04166 363 MobiDBLite consensus disorder prediction 153 173 - -
Vivi7g04166 363 Gene3D - 169 245 IPR036638 GO:0046983
Vivi7g04166 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 228 IPR011598 GO:0046983
Vivi7g04166 363 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04166 Vivi-Chr7 109124198 109126921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04166 40 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 41.369 8.65e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g04166 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04166 - - gmx:100789928 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04166 7 109124198 109126921 Vivi7g04166 7 109124198 109126921 ECH