Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04159 ATGGAGTTGTTGCAAGAAGTGAAAGGCTATTCACAAGAGGAAGAGGAAGAAGAAGAAATCATAACAAGAACAACAAAAGAAGATGAAAACAGTAGAATCAATCATCATCATCATCACTCTCCTGAGTCTCACAATTCATCTTCTGGTGGATTAGGGCTATTACACCAACATCATCATCATCATCAACATCAAGATGCTACAACAACAACAACAACCTCGAATTTCAAAAATCAAACAAGTTTAAAACAAATTGATTTCATGGAATTATCACTAGGTAGCAACAGCAGCATCATCAACAAAGATCCTAGTTCTTCGAATGCAAACATAAACAACCTACATCAACCGCAAGAGCAGCAACAGCAACAACCTAGTACTCATGAAAAAGAGCACATGTTCGACAAAGTTGTAACCCCGAGTGATGTTGGAAAACTGAACCGTTTAGTGATACCGAAACAGCATGCTGAGAAGTATTTCCCTCTCGATTCAACCTCGAATGAGAAAGGCCTTCTTCTCAATTTCGAAGATCGAAATGGAAAATTGTGGAGATTCAGATACTCTTATTGGAACAGTAGTCAAAGCTATGTCATGACAAAAGGTTGGAGCCGTTTTGTCAAAGAGAAAAAACTTGATGCCGGTGACATTGTTTCGTTTCAACGAGGCGTTGGCGATTTGTTTCGACATCGATTGTTTATCGATTGGAGGAGGAGAACTAATCATAACCATAATATGGATCCTTCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAGCAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTCTACTCACTTCCTTATCCTTCACCACAATCACAAAGGTTACAACAACAAAATCTTCATGACCCTTTACAGAATCAGATGAATTACAATTACCAAATGTATCCATTTCACCAACAAGGTGTTAATGCGAATCCGAATTACAATTTTCATCATCATGATCCAAGTTCTCTCTTTTACATGAGATCATCGTTACCATCGGCGCCGTCGATGGTTGATCAAGGAAGCTTAACAAGACAACAAGGAGGAGGAGGAGGAGGAGTAGGAGTAGGAGGAGACAATGTTCCAAACATGATTATTGATTCTGTTCCTGTTTCTCATCATTATCATCAACAACATGGTGGTTTTTCTAGCAGTGGAAATTTTACTAGTTCTAGTACAATGGCTAGTAGTAGTATTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAATGTGGATCTTCAACAAGTGATGATAATTTGCCTAATTCACTTCCTTCTTCTTCAAATTTGAGAGAAACATTTTCAACATCATCAACAACATTTGAAGAGGACAAGAAAAGAGAAGCTTCATTGATTTTTGGTTTAGACCCTTCTTTGCAATATCATAATTTCCATCAACAATGA 1428 0.3768 MELLQEVKGYSQEEEEEEEIITRTTKEDENSRINHHHHHSPESHNSSSGGLGLLHQHHHHHQHQDATTTTTTSNFKNQTSLKQIDFMELSLGSNSSIINKDPSSSNANINNLHQPQEQQQQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLFRHRLFIDWRRRTNHNHNMDPSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPSPQSQRLQQQNLHDPLQNQMNYNYQMYPFHQQGVNANPNYNFHHHDPSSLFYMRSSLPSAPSMVDQGSLTRQQGGGGGGVGVGGDNVPNMIIDSVPVSHHYHQQHGGFSSSGNFTSSSTMASSSINGAAKRLRLFGVNMECGSSTSDDNLPNSLPSSSNLRETFSTSSTTFEEDKKREASLIFGLDPSLQYHNFHQQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04159 475 CDD B3_DNA 130 219 IPR003340 GO:0003677
Vivi7g04159 475 MobiDBLite consensus disorder prediction 23 43 - -
Vivi7g04159 475 MobiDBLite consensus disorder prediction 421 445 - -
Vivi7g04159 475 MobiDBLite consensus disorder prediction 95 129 - -
Vivi7g04159 475 MobiDBLite consensus disorder prediction 421 450 - -
Vivi7g04159 475 MobiDBLite consensus disorder prediction 1 73 - -
Vivi7g04159 475 FunFam B3 domain-containing protein 125 245 - -
Vivi7g04159 475 Pfam B3 DNA binding domain 132 236 IPR003340 GO:0003677
Vivi7g04159 475 MobiDBLite consensus disorder prediction 95 122 - -
Vivi7g04159 475 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 429 IPR044800 GO:0003700
Vivi7g04159 475 Gene3D - 125 245 IPR015300 -
Vivi7g04159 475 ProSiteProfiles B3 DNA-binding domain profile. 132 237 IPR003340 GO:0003677
Vivi7g04159 475 SMART B3_2 132 237 IPR003340 GO:0003677
Vivi7g04159 475 SUPERFAMILY DNA-binding pseudobarrel domain 128 233 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04159 Vivi-Chr7 108870766 108872986 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04159 114 422 RAV Transcription Factor Family AT2G46870 44.516 6.37e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi7g04159 B3 3.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04159 K09287 - gmx:100781424 380.948