Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04156 ATGGAGTTGTTGCAAGAAGTGAAAGGCTATTCACAAGAGGAAGAGGAAGAAGAAGAAATCATAACAAGAACAACAAAAGAAGATGAAAACAGTAGTAAGCAACAATTACAACACTGCCCTTTTTCTTCTTCTCCTTCTAATTTCTCTTTATCTTCTTCTTCACCTTCAACAACTCATCATCATCATCATAATCATAATCATGATGTCACAAATCAATGGCTAGGAATCAATCATCATCATCATCACTCTCCTGAGTCTCACAATTCATCTTCTGGTGGATTAGGGCTATTACACCAACATCATCATCATCATCAACATCAAGATGCTACAACAACAACAACAACCTCGAATTTCAAAAATCAAACAAGTTTAAAACAAATTGATTTCATGGAATTATCACTAGGTAGCAACAGCAGCATCATCAACAAAGATCCTAGTTCTTCGAATGCAAACATAAACAACCTACATCAACCGCAAGAGCAGCAACAGCAACAACCTAGTACTCATGAAAAAGAGCACATGTTCGACAAAGTTGTAACCCCGAGTGATGTTGGAAAACTGAACCGTTTAGTGATACCGAAACAGCATGCTGAGAAGTATTTCCCTCTCGATTCAACCTCGAATGAGAAAGGCCTTCTTCTCAATTTCGAAGATCGAAATGGAAAATTGTGGAGATTCAGATACTCTTATTGGAACAGTAGTCAAAGCTATGTCATGACAAAAGGTTGGAGCCGTTTTGTCAAAGAGAAAAAACTTGATGCCGGTGACATTGTTTCGTTTCAACGAGGCGTTGGCGATTTGTTTCGACATCGATTGTTTATCGATTGGAGGAGGAGAACTAATCATAACCATAATATGGATCCTTCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAGCAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTCTACTCACTTCCTTATCCTTCACCACAATCACAAAGGTTACAACAACAAAATCTTCATGACCCTTTACAGAATCAGATGAATTACAATTACCAAATGTATCCATTTCACCAACAAGGTGTTAATGCGAATCCGAATTACAATTTTCATCATCATGATCCAAGTTCTCTCTTTTACATGAGATCATCGTTACCATCGGCGCCGTCGATGGTTGATCAAGGAAGCTTAACAAGACAACAAGGAGGAGGAGGAGGAGGAGTAGGAGTAGGAGGAGACAATGTTCCAAACATGATTATTGATTCTGTTCCTGTTTCTCATCATTATCATCAACAACATGGTGGTTTTTCTAGCAGTGGAAATTTTACTAGTTCTAGTACAATGGCTAGTAGTAGTATTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAATGTGGATCTTCAACAAGTGATGATAATTTGCCTAATTCACTTCCTTCTTCTTCAAATTTGAGAGAAACATTTTCAACATCATCAACAACATTTGAAGAGGACAAGAAAAGAGAAGCTTCATTGATTTTTGGTTTAGACCCTTCTTTGCAATATCATAATTTCCATCAACAATGA 1557 0.3738 MELLQEVKGYSQEEEEEEEIITRTTKEDENSSKQQLQHCPFSSSPSNFSLSSSSPSTTHHHHHNHNHDVTNQWLGINHHHHHSPESHNSSSGGLGLLHQHHHHHQHQDATTTTTTSNFKNQTSLKQIDFMELSLGSNSSIINKDPSSSNANINNLHQPQEQQQQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLFRHRLFIDWRRRTNHNHNMDPSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPSPQSQRLQQQNLHDPLQNQMNYNYQMYPFHQQGVNANPNYNFHHHDPSSLFYMRSSLPSAPSMVDQGSLTRQQGGGGGGVGVGGDNVPNMIIDSVPVSHHYHQQHGGFSSSGNFTSSSTMASSSINGAAKRLRLFGVNMECGSSTSDDNLPNSLPSSSNLRETFSTSSTTFEEDKKREASLIFGLDPSLQYHNFHQQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04156 518 MobiDBLite consensus disorder prediction 464 488 - -
Vivi7g04156 518 MobiDBLite consensus disorder prediction 464 493 - -
Vivi7g04156 518 MobiDBLite consensus disorder prediction 1 116 - -
Vivi7g04156 518 Pfam B3 DNA binding domain 175 279 IPR003340 GO:0003677
Vivi7g04156 518 MobiDBLite consensus disorder prediction 138 165 - -
Vivi7g04156 518 CDD B3_DNA 173 262 IPR003340 GO:0003677
Vivi7g04156 518 SUPERFAMILY DNA-binding pseudobarrel domain 171 276 IPR015300 -
Vivi7g04156 518 MobiDBLite consensus disorder prediction 138 172 - -
Vivi7g04156 518 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 472 IPR044800 GO:0003700
Vivi7g04156 518 Gene3D - 168 288 IPR015300 -
Vivi7g04156 518 MobiDBLite consensus disorder prediction 34 57 - -
Vivi7g04156 518 FunFam B3 domain-containing protein 168 288 - -
Vivi7g04156 518 ProSiteProfiles B3 DNA-binding domain profile. 175 280 IPR003340 GO:0003677
Vivi7g04156 518 SMART B3_2 175 280 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04156 Vivi-Chr7 108870766 108872989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04156 157 465 RAV Transcription Factor Family AT2G46870 44.516 1.65e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi7g04156 B3 3.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04156 K09287 - gmx:100781424 396.741