Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04154 ATGGCAACAAGTTCATTTCCCATTCATAGTTTTGTTCCTGTTGGTTTCAGATTCCGTCCAACAGACCAAGAGCTTGTTGACCACTACCTCAGAAACAAACTACTTGGTAATGTTTCGGTTGTCAACAATGTTATAGCTGAAGTTGATGTTTGCAAGTTTGAACCATGGGAGTTACCAGGTTTTTCTGTGATAAAATCTGATGATCCTGAGTGGTTTTTTCTGTCTCCGCGTGATTATAAATATGCTAAGAGCAAGAGGTTTAACCGGGCTACAAAATATGGATTTTGGAAGGCTACTGGTAATGACAGGAATGTTAAGGTTAGAGGGACTGATAAGGTTATTGGGACTAAGAAGACTCTTGTTTATTATAAAGGTCGGGTTCCTGGTGTGAAGACCAATTGGGTTATTCATGAGTATCATGCTGCCAACTTTGAGGATGATCAGAGGACTTTTGTTTTATGCCGCTTGATGAAGAAAGCGGAGAAAAAGCCCGAAGAGGAAGCTGATATAATGGTCTGTGATGAAGGGGAGCCCAGCAGACACATGAGCTCTGACTATGAAAATCGAGAAACGGTCGAAGGAATTCCTGATGTGATAAGTGATCCTTTACCGGAAATGAACATGGGATCAGTATTTCAAGAGCCGCATCAGGCAGACAGATACTTTCCCTTCGCGACGCAACAATCTTTAATCTCTGAAAACGAGCCGGAAGTCTCTGTCCCAAACTTCCGATTCCCCGATGCCTATTTTGGAAATGAGAATATCGACTTTCAGAGTTCGTTTGAAACAATTGAAGAGGAAGATAAGTTCATCAACTCAATGTTGATCGAGTCTGAGTCGTTGAGAATGGCCTACTATAATAGCAGCGAAGCAGATGTTGATATAGTCTCTACGCCGCTGTTACACAATTTTCTTGATACTTCAACAATGTATCTTGAAAATCCTAGTTCGGGCGAATATGGATGTACTCGTGTTCTATCTTTTAACAATGATGAAAGCAAAGACGAACATGAAAGTACCTATTACGACGATTTTGGGGGAGTGGAGGCATCCTCTTGTGACTCAACTGCCGGTAAATCTTTGGAGATGAGCTCTGTCGAAATTTCCAGTTCTTCGACACCAAGAAGAGACAAAAACCAAAATCGTTCATCTTCGTGTCACAAATAG 1167 0.4139 MATSSFPIHSFVPVGFRFRPTDQELVDHYLRNKLLGNVSVVNNVIAEVDVCKFEPWELPGFSVIKSDDPEWFFLSPRDYKYAKSKRFNRATKYGFWKATGNDRNVKVRGTDKVIGTKKTLVYYKGRVPGVKTNWVIHEYHAANFEDDQRTFVLCRLMKKAEKKPEEEADIMVCDEGEPSRHMSSDYENRETVEGIPDVISDPLPEMNMGSVFQEPHQADRYFPFATQQSLISENEPEVSVPNFRFPDAYFGNENIDFQSSFETIEEEDKFINSMLIESESLRMAYYNSSEADVDIVSTPLLHNFLDTSTMYLENPSSGEYGCTRVLSFNNDESKDEHESTYYDDFGGVEASSCDSTAGKSLEMSSVEISSSSTPRRDKNQNRSSSCHK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04154 388 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 254 - -
Vivi7g04154 388 MobiDBLite consensus disorder prediction 337 388 - -
Vivi7g04154 388 SUPERFAMILY NAC domain 9 159 IPR036093 GO:0003677|GO:0006355
Vivi7g04154 388 MobiDBLite consensus disorder prediction 353 379 - -
Vivi7g04154 388 ProSiteProfiles NAC domain profile. 12 159 IPR003441 GO:0003677|GO:0006355
Vivi7g04154 388 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Vivi7g04154 388 Gene3D NAC domain 21 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04154 Vivi-Chr7 108759939 108762255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04154 12 177 NAC Transcription Factor Family AT1G33060 54.070 2.29e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi7g04154 NAM 3.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04154 - - psat:127076164 653.284