Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04128 ATGAAATTTTCAGAGGTAACAAACATGGGTGCAACTGTAGCTGCAACTGCAACTGCAACACCAGAGCCAAGTGACAGATTGGCTGATTCTGATCCAATTGAACTGACAGGAAAAATCATGGTGGTAGCTATAATTTTCCTGTTTGTAGTTGTTATGTTTGTTCTAATGCTTCACTTATATGCTAAGTGGTTCTGGTGGCGTTTTGAGGAGAGAATACCTCCTCAGCAAAGAAACCGCCGTCGTCGACGGCGGTTTCAATTTGCTCCTGGTCAAGATCCTATCATCTATGGAAGTGGAACTCACCAAATTGGACTTGAAGCTTCAATTCTTAAGTCCTTGCCTGTTTTGGTTTTCAAACCAGAAGATTTCAAAGATGGTTTGGAATGTGCTGTTTGTCTTTGTGATGTTGATGAAGGAGAAAAGGCTAGAATTTTACCAAAATGCAATCATGGATTTCATTTAGATTGCATTGATATGTGGTTTCAATCTCATTCCACTTGTCCTCTTTGTAGGAATCTAGTTTCTAATGAATCTTCTAAGCCTAATAGTACTTCAAATGCTGAAGAGATCAATGTGTTAGTTTCATCGGAAGATGAAAATTTGAGTAATATGAATGGTTTAGAGTCTTCAAATTTTCCAACAAATGTTTTGGTTTTTGGTAATTGCCAAACCCAAACCCAAACACAAGTTAGTCCTTTTGGTGTTTCTTTGGAAGAAGGAAATTCTCAACAACAACCTTGTTCAACATCATCATCATCATCATCTTCTTTAGCTAGTGTTAATAATACAATGTTGGTGATTGATATACCATTACCAAGTGAGTTTGGTTCTTTCTCTTTGTCATCTTATGATAGTTGGTGTGTTGAAGTTGAAGTTGAAGTTGAAAATGAGATGAAATCACCAATGTCAACAAGATTGAGGTCATTTAAGAGGCTTTTAAGTAGGGACAAGAAGTTAAGTCCTTGCAGTCCAGGTTCTATGGATGTTGAACAAGGCCATAGCTAG 1005 0.3741 MKFSEVTNMGATVAATATATPEPSDRLADSDPIELTGKIMVVAIIFLFVVVMFVLMLHLYAKWFWWRFEERIPPQQRNRRRRRRFQFAPGQDPIIYGSGTHQIGLEASILKSLPVLVFKPEDFKDGLECAVCLCDVDEGEKARILPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSNESSKPNSTSNAEEINVLVSSEDENLSNMNGLESSNFPTNVLVFGNCQTQTQTQVSPFGVSLEEGNSQQQPCSTSSSSSSSLASVNNTMLVIDIPLPSEFGSFSLSSYDSWCVEVEVEVENEMKSPMSTRLRSFKRLLSRDKKLSPCSPGSMDVEQGHS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04128 334 CDD RING-H2_EL5-like 128 171 - -
Vivi7g04128 334 Pfam Ring finger domain 128 171 IPR001841 -
Vivi7g04128 334 SUPERFAMILY RING/U-box 109 176 - -
Vivi7g04128 334 SMART ring_2 129 170 IPR001841 -
Vivi7g04128 334 MobiDBLite consensus disorder prediction 236 256 - -
Vivi7g04128 334 FunFam RING-H2 finger protein ATL3 97 176 - -
Vivi7g04128 334 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 34 177 IPR044675 -
Vivi7g04128 334 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vivi7g04128 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04128 Vivi-Chr7 108270026 108271688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04128 34 317 C3H Transcription Factor Family AT1G53820 42.949 2.03e-59 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04128 - - vvo:131618227 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04128 7 108270026 108271688 Vivi7g04128 7 108270026 108271688 ECH