Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04122 ATGAACAAAATAAAACAATCCCTCGCCGGAATCTCAAACTCCGGCAACAACAACATCAACAAAAAACTCATCTTCACCTTTTTCACATCACTTCTCATCATAACCACCATAGTAGCCATTGTCGCAACAACAACAACATCCAAAAACAAAACCAAAACCAACAAAATCACTTCATCTTCTCTCTCACTCTCTCACCATTCCCACACCATCATCAAATCCGCTTGCACCACCACACTCTACCCTGACCTTTGCTTCTCCGCCATTTCCTCCGAACCAAACGTAACTCACAGAATCACCAACCACAAAGACGTTATCTCAGTCTCTCTCAACATCACAGCCAGAGCAGTCGAACATAACTTCTTCACCGTGAAAAACCTCCTCACGTTGAAAAACCTCACGGAGAGAGAGAAAACCGCTCTTCATGATTGCTTAGAAACCATTGACGAAACGCTAGACGAACTCAAAGAAGCTGAGAAAGATCTCGCGTTGTATCCATCCAAAAAGACAGTATATCAACATGCAGATGATCTGAAAACGCTCATCAGCGCCGCCATTACCAACCAGGTTACTTGCTTGGACGGTTTCTCCCACGACGGCGCTGATAAGAGAGTGAGGAAGGTTCTAGAAGAAGGACAAGTCCACGTGGAACATATGTGTAGTAATGCATTAGCCATGACGAAGAACATGACAGATTCAGACATAGCAGAATTTGAACAGACAAACGGTAGGAAATTATTGGAGGAGGAGAATGGAGCTGTGAGGTGGCCGGAGTGGTTAACGGCTGGGGATAGGAGGTTGCTGCAAGGGGGAGCGGTGAAGGCGGATGTGGTGGTGGCGGCGGACGGGAGTGGAGACTTTAAGACGGTGTCGGAGGCGGTGGCGGCTGCTCCTTTGAAAAGTAGTAAGAGATTTGTGATAAAGATAAAAAGTGGGGTGTATAAAGAGAATGTGGAGGTGCCGAAGAAAAAGATAAATATAATGTTTTTGGGAGATGGTAAAACTACTACTATTATTACTGGTGATAGGAATGTTGTTGATGGAAGCACCACTTTTCACTCTGCTACTGTTGCCATAGTAGGAGCAAATTTCCTAGCAAAAGACATAACGTTCCAAAACACAGCCGGTCCAGCAAAGCACCAAGCAGTGGCCCTAAGAGTTGGCGCTGACCTCTCAGCTTTCTACAACTGCGACATCATAGCATACCAAGACACCCTCTACGTCCACAACAACAGACAATTCTTCGTCAACTGTTTCATTTCCGGAACGGTCGACTTCATCTTTGGAAACGCAGCGGTCGTCTTCCAGAACTGCGACATCCATGCAAGACGTCCTGACTCGGGACAGAAAAACATGGTCACTGCACAAGGGAGAGTTGATCCCAACCAGAACACTGGCATTGTGATACAGAAATGTAGGATTGGTGCAACTAAGGATTTGGAGGGTGTGAAGAGTAGTTTTCCTACTTATCTAGGAAGGCCTTGGAAGGAGTATTCTAGGACAGTGATCATGCAGAGTGTTATTGGTGATGTTATTGAACCTGTTGGATGGCATGAATGGAATGGGAATTTTGCTTTGGATAGTTTGGTTTATAGGGAATATTTGAATACTGGTCCTGGTTCTGGGACTTCTAAGAGGGTGACATGGAAAGGGTTTAAGGTTATTAGTAGTGTTGCTGAGGCACAGAGTTTTACTGCTGGGAATTTTATTGGGGGGTCTAGTTGGTTGAGTTCTACTGGGTTTCCTTTCTCTCTTGGGCTTTGA 1761 0.452 MNKIKQSLAGISNSGNNNINKKLIFTFFTSLLIITTIVAIVATTTTSKNKTKTNKITSSSLSLSHHSHTIIKSACTTTLYPDLCFSAISSEPNVTHRITNHKDVISVSLNITARAVEHNFFTVKNLLTLKNLTEREKTALHDCLETIDETLDELKEAEKDLALYPSKKTVYQHADDLKTLISAAITNQVTCLDGFSHDGADKRVRKVLEEGQVHVEHMCSNALAMTKNMTDSDIAEFEQTNGRKLLEEENGAVRWPEWLTAGDRRLLQGGAVKADVVVAADGSGDFKTVSEAVAAAPLKSSKRFVIKIKSGVYKENVEVPKKKINIMFLGDGKTTTIITGDRNVVDGSTTFHSATVAIVGANFLAKDITFQNTAGPAKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFFVNCFISGTVDFIFGNAAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKSSFPTYLGRPWKEYSRTVIMQSVIGDVIEPVGWHEWNGNFALDSLVYREYLNTGPGSGTSKRVTWKGFKVISSVAEAQSFTAGNFIGGSSWLSSTGFPFSLGL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04122 586 Pfam Plant invertase/pectin methylesterase inhibitor 70 225 IPR006501 GO:0004857
Vivi7g04122 586 FunFam Pectinesterase 270 586 - -
Vivi7g04122 586 Pfam Pectinesterase 275 571 IPR000070 GO:0030599|GO:0042545
Vivi7g04122 586 SMART PMEI_2 66 225 IPR006501 GO:0004857
Vivi7g04122 586 Coils Coil 140 160 - -
Vivi7g04122 586 Gene3D - 269 586 IPR012334 -
Vivi7g04122 586 NCBIfam pectinesterase inhibitor domain 59 229 IPR006501 GO:0004857
Vivi7g04122 586 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Vivi7g04122 586 CDD PMEI-like_3 73 230 - -
Vivi7g04122 586 FunFam Pectinesterase 67 230 - -
Vivi7g04122 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 230 IPR035513 -
Vivi7g04122 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 230 IPR035513 -
Vivi7g04122 586 SUPERFAMILY Pectin lyase-like 271 585 IPR011050 -
Vivi7g04122 586 PANTHER PECTINESTERASE 37 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04122 Vivi-Chr7 108113641 108119958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04122 62 586 Carbohydrate Esterase AT3G14310 71.376 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04122 K01051 - pvu:PHAVU_010G123100g 865.914