Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04121 ATGGATACTATCAAATCCTTCAAAGGTTACGGCAAAGTAGACGAACTAGAACAACAAGCATTCAAAAAAAAGACACGTAAGCGCATCACCATCATAACCATCTCCTCCCTCATTCTCATCGCAGTCATCATAGCCGCGGTCGCAGGAATCCTCATACACAAGCGCAACACCTCATCAAACCCCTCCTCCAACTCCCTCCCCAACACCGATTTAAACCCTGCCACGTCACTCAAAGCCGTTTGCGACGCAACTCAGTACCCCAACTCGTGCTTCGCCGCAATCTCCTCCCTCCCCGAATCCAACACCACCGATCCGGAGAAGCTCTTCAAGCTCTCACTCAAAGTTGCCATCGACGAACTCTCCAATCTCACGCGCTTTAGTAATAAGCTCAAAGCGAGTGGAGACACGCGCCTTGAGAAAGCTTTACGTGTTTGCGGCACCGTTCTTGGAGATTCTTTGGATCGGCTCAATGATTCGATGTCGACGGTTATCGCCGATGAGAAGATTCTCTCACCGGCGAAAGTCCGCGACGTCGAAACATGGCTTACCGCTGCTTTAACAGATCACGATACGTGTTTGGACGCTGTTGGTGAGTTAAACTCCACCGCCGCGCGTGGTGTTTTGAAACAAATCGAGACCGCTATGAAAAACTCTACTGAGTTTGCTAGTAACAGTTTGGCGATCGTAACAAAGGTTATAAGATTATTATCGAATTTTGAGATTCCGAGTCACCACCGGAGGTTGTTAGAGTTTCCGGAGTGGTTAGGAGCGGCTGAGAGGAGGCTTCTGGCGGATACGGTGAACACGACGGCGGATGCGGTGGTGGCGAAGGATGGTTCTGGACAGTATACTACTATAGGGGAAGCGTTGAAGAATGTGAAGAAGAAGAGTGATGTGAGATTCGTTGTGTATGTGAAGAAAGGGATATACGTGGAGAATATCGATTTGGATAAGAATACGTGGAATGTGATGATCTACGGTGATGGTATGACGGAAACCATCGTCAGCGGTAGCCGGAATTTCATCGACGGCACACCGACCTTTGAAACTGCCACCTTCGCTGTTAAAGGCAAGGGGTTCATTGCCAAGGACATACAATTCCTGAACACTGCAGGTGCATCTAAGCACCAAGCTGTGGCATTCCGATCCGGCTCAGATCAATCTGTGTTCTACAAGTGTTCATTTGTGGGATATCAGGATACCCTTTACGCACATTCAAATCGTCAATTCTACCGTGAATGTGAAATTACAGGTACCATAGACTTCATATTTGGAAATGCAGCTGTTGTGTTCCAGAGTTGCAAAATCATGCCTAGGCAACCACTATCAAATCAGTTCAACACCATAACAGCTCAGGGTAAAAAGGATCCTAATCAAAACTCTGGAATTGTGATCCAGAAATCAACTATTACGCCTTATGACAATCTCGTTGCACCAACTTACCTTGGTAGGCCATGGAAAGATTTCTCCACCACTCTTATCATGAAATCAGATATTGGCTCATTCTTGAAACCAGTGGGGTGGATAAGTTGGGTTGCTAATGTGGAACCTCCAAGTAGCATCCTATATGCTGAATACCAGAACACTGGGCCAGGAGCAGATGTAACCCAAAGAGTCAAGTGGGCCGGTTATAAGCCGGCTATCGCAGACGAAGAGGCGTTGAAGTTCACAGTAGAGTCCTTTATCCAGGGCTCTGAGTGGTTGCCAAATGCTGCTGTGCAGTTTGAATCTACCTTGTGA 1740 0.4724 MDTIKSFKGYGKVDELEQQAFKKKTRKRITIITISSLILIAVIIAAVAGILIHKRNTSSNPSSNSLPNTDLNPATSLKAVCDATQYPNSCFAAISSLPESNTTDPEKLFKLSLKVAIDELSNLTRFSNKLKASGDTRLEKALRVCGTVLGDSLDRLNDSMSTVIADEKILSPAKVRDVETWLTAALTDHDTCLDAVGELNSTAARGVLKQIETAMKNSTEFASNSLAIVTKVIRLLSNFEIPSHHRRLLEFPEWLGAAERRLLADTVNTTADAVVAKDGSGQYTTIGEALKNVKKKSDVRFVVYVKKGIYVENIDLDKNTWNVMIYGDGMTETIVSGSRNFIDGTPTFETATFAVKGKGFIAKDIQFLNTAGASKHQAVAFRSGSDQSVFYKCSFVGYQDTLYAHSNRQFYRECEITGTIDFIFGNAAVVFQSCKIMPRQPLSNQFNTITAQGKKDPNQNSGIVIQKSTITPYDNLVAPTYLGRPWKDFSTTLIMKSDIGSFLKPVGWISWVANVEPPSSILYAEYQNTGPGADVTQRVKWAGYKPAIADEEALKFTVESFIQGSEWLPNAAVQFESTL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04121 579 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Vivi7g04121 579 Gene3D - 266 579 IPR012334 -
Vivi7g04121 579 CDD PMEI-like_3 79 231 - -
Vivi7g04121 579 Pfam Plant invertase/pectin methylesterase inhibitor 77 228 IPR006501 GO:0004857
Vivi7g04121 579 FunFam Pectinesterase 73 233 - -
Vivi7g04121 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 232 IPR035513 -
Vivi7g04121 579 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Vivi7g04121 579 SUPERFAMILY Pectin lyase-like 270 576 IPR011050 -
Vivi7g04121 579 NCBIfam pectinesterase inhibitor domain 61 231 IPR006501 GO:0004857
Vivi7g04121 579 FunFam Pectinesterase 266 579 - -
Vivi7g04121 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 232 IPR035513 -
Vivi7g04121 579 PANTHER PECTINESTERASE 36 569 - -
Vivi7g04121 579 Pfam Pectinesterase 272 564 IPR000070 GO:0030599|GO:0042545
Vivi7g04121 579 SMART PMEI_2 72 228 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04121 Vivi-Chr7 108096143 108099659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04121 1 573 Carbohydrate Esterase AT1G53840 58.913 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04121 - - gmx:100784642 861.292