Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04109 ATGAGTTCTTCTTCTGGAAACAACACATCAAGAAAACACAACAACACAAGTAAGAAAAACCCTAAAATCAAGAAAGGAGAAAAATCAGACATGTGTCGCATGGCCTTCTCAAAGCACAAACTAGGGCTTTTCAACAAGGTCACAGAGCTATCAATTCTATGCAAAGCAAAAACTGCATTGATCATCACTTCACCAAACAAAAAAATGTATGCATGTGGTTACCCTAATCCTGATGCTGTGATTAGTCACTTCATTGGAAAGGAAAGCCATGTGATCGACAATGAAATAAGGAGGCAAGATGAAGAAACAATTGAAGCCTTGAGTCTTCAGCAAGAAGCACTTTTAGAACAATTGCAAGAAGAGAAGAATAAGTTACAAGAAGCAATAGAGGCAAACAATAATAGTTCTAATTTTCCTAATTGGTGGGATTATTCTATTGATGACATGAGTGTGGAATCCCTTGAGCAATATAAGAGTTCTTTAGAAAATTTGAAACTTAATTTAGTTTCATCTTTGGAAGGGAAATAG 528 0.3561 MSSSSGNNTSRKHNNTSKKNPKIKKGEKSDMCRMAFSKHKLGLFNKVTELSILCKAKTALIITSPNKKMYACGYPNPDAVISHFIGKESHVIDNEIRRQDEETIEALSLQQEALLEQLQEEKNKLQEAIEANNNSSNFPNWWDYSIDDMSVESLEQYKSSLENLKLNLVSSLEGK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04109 175 SUPERFAMILY SRF-like 18 86 IPR036879 GO:0003677|GO:0046983
Vivi7g04109 175 CDD MADS 22 70 - -
Vivi7g04109 175 PANTHER MADS BOX PROTEIN 22 168 - -
Vivi7g04109 175 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Vivi7g04109 175 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Vivi7g04109 175 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Vivi7g04109 175 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Vivi7g04109 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 71 IPR002100 GO:0003677|GO:0046983
Vivi7g04109 175 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Vivi7g04109 175 MobiDBLite consensus disorder prediction 1 28 - -
Vivi7g04109 175 Gene3D - 30 138 IPR036879 GO:0003677|GO:0046983
Vivi7g04109 175 Coils Coil 97 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04109 Vivi-Chr7 107902086 107902613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04109 22 165 Type I MADS-box Gene Family AT5G60440 33.333 1.57e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi7g04109 SRF-TF 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04109 - - psat:127076209 245.743