Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04107 ATGGATTCTCAGGATATAGTTAGAAAGACAAATGATCAGCCTGAAGTCTCCTTGATGGCAGGTGAAAGTGCAAAATCGCTTAATCAAGCTTTTCTCAGTTTCTTTGAGTCTTTTATCGCAAGTGAAGTCGTCGGTGGAGGATCCATGAGAATTGGCAAGTTCATTTCATGCATTCTATCTACTAGTAAACACTTCTTGAAGAAAAATATTTGTGAGATCATCGAGGAAAATTCATCCTCTACAATAGATGAAGAAGAGTTTTATGATGCTGAAGAAAATTGTCCAATATATGATGACAAGCATGTCGTAGAAATCAAAGTAGTGGATGGTGATGATAATACACTCTTGAGAAACCTAAAACAGAAACATAAGGAGACTATTGAAGACAAATATTCTACTCAATTGAAACATGAGTCCTATTGTTCTATTTGTATGGAAGCTAAACCAATTAAAGAAATGTTCAAAAATCAAAATTGTTCACACTCTTTTTGTGAAGATTGTATTAGAAGATATCTAGCTACAAAAATTCAAGACAATACATCAAGGGTAAATTGTCCTGAACCTAGCTGCAAAGGAACCTTAGAGGCTTATCATTGTATTTCAATTATACCAAAGGAGGTGTTTGATAGATGGGAAAATGCACTTTGTGAGAATTCGGTATTAGAATCACAAAAAATTTATTGCCCTTTTAAAGATTGTTCAACAATGTTGGTGAATGATGCAAAGGAAGTTGTGACAGCTTCAGAATGTCCACATTGTCATCGATTATTTTGCGCACAATGTAGGGTTTCGTGGCATGTAGGAGTTGACTGTAAAGAGTTTCATAATTTGAAAAATAGTGAGCAAGGGAGTGAAGATTTATTGGCGATGAAACTTGCAAGGAAAAAGAATTGGAAAAGATGTCCAAAATGCAACTACTATGTGGAAAAAGTTCATGGATGTACTCACATTATATGCAGGTGTCATCATCAATTTTGCTATGGATGTGGAGGCACTTGGACAGGAGGGTCTCATTATAAATGTAGAGTTCGAAAAAAATATGCATTATTGCCTTGTTTGATTTGA 1065 0.3493 MDSQDIVRKTNDQPEVSLMAGESAKSLNQAFLSFFESFIASEVVGGGSMRIGKFISCILSTSKHFLKKNICEIIEENSSSTIDEEEFYDAEENCPIYDDKHVVEIKVVDGDDNTLLRNLKQKHKETIEDKYSTQLKHESYCSICMEAKPIKEMFKNQNCSHSFCEDCIRRYLATKIQDNTSRVNCPEPSCKGTLEAYHCISIIPKEVFDRWENALCENSVLESQKIYCPFKDCSTMLVNDAKEVVTASECPHCHRLFCAQCRVSWHVGVDCKEFHNLKNSEQGSEDLLAMKLARKKNWKRCPKCNYYVEKVHGCTHIICRCHHQFCYGCGGTWTGGSHYKCRVRKKYALLPCLI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04107 354 CDD Rcat_RBR_unk 297 333 - -
Vivi7g04107 354 CDD BRcat_RBR_unk 222 274 - -
Vivi7g04107 354 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 92 341 IPR031127 GO:0004842|GO:0016567
Vivi7g04107 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 222 IPR013083 -
Vivi7g04107 354 Pfam Zinc finger, C3HC4 type (RING finger) 141 186 IPR018957 GO:0046872
Vivi7g04107 354 SMART ibrneu5 285 341 IPR002867 GO:0008270
Vivi7g04107 354 SMART ibrneu5 209 271 IPR002867 GO:0008270
Vivi7g04107 354 ProSiteProfiles Zinc finger RING-type profile. 141 186 IPR001841 -
Vivi7g04107 354 Pfam IBR domain, a half RING-finger domain 291 339 IPR002867 GO:0008270
Vivi7g04107 354 Pfam IBR domain, a half RING-finger domain 210 271 IPR002867 GO:0008270
Vivi7g04107 354 ProSitePatterns Zinc finger RING-type signature. 159 168 IPR017907 -
Vivi7g04107 354 SUPERFAMILY RING/U-box 137 218 - -
Vivi7g04107 354 Gene3D - 267 348 - -
Vivi7g04107 354 FunFam RBR-type E3 ubiquitin transferase 136 222 - -
Vivi7g04107 354 SUPERFAMILY RING/U-box 221 275 - -
Vivi7g04107 354 ProSiteProfiles TRIAD supradomain profile. 137 345 IPR044066 -
Vivi7g04107 354 SUPERFAMILY RING/U-box 284 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04107 Vivi-Chr7 107861673 107866870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04107 112 341 C3H Transcription Factor Family AT2G31760 29.339 1.26e-19 88.2