Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04106 ATGGATTCTCAAGATATAGATAGAAAGACAAATGATCAGCCTGTCGTCGGTGGAGTTAAACAATTCTTGAAGAAAAATATTTGGGAGATCGTCCAGGGAAATTCATCCTCTATGATAGATGAAGACAAGTTTTATGATGCTGAAGAAAATTTTCCAATAATTGATGACAAGTATGTCGTTGAAATCCAAGTAATGGATAGTGAGGATATCACACCCTTGAGAAACCTCAAACAGAAACAAAAGGAGACTATTGAAGAAAAATATTCTATTCAATTGAAACAATTCTATTGTTCTATTTGTATGGAAGCTAAACCAATCAAAGAAATGTTCAAAAATCCAAATTGTTCACACTCCTTCTGTGAGGATTGTATTGGTAAATACCTAGCTGCAAAAATTCAAGAGAATATATCAAGGGTAAACTGTCCTGAACCAAATTGCAAAGGAACTTTAGAGGCTTATTATTGCAGTTCAATTATACCAAAGGATGCATTTGATAGATGGGACAATGCACTTTGTGAGAATTCAGTATTAGAATCACAAAAATTTTATTGTCCTTTTAAGGATTGTTCAGCAATGTTGGTAAATGATGCAAAGGAAGTTGTGACGACTTCAGAATGTCCACATTGTCATAGATTATTTTGCGCACAGTGTAGGGTTTCGTGGCATGCAGGAGTTAGTTGCAGAAAGTTTCAAAGTTTGAAAAACAATGAACGAGGAGGGAAGGAAGATTTATTGGCGATGAATCTTGCAAATAGAAAGAAATGGAAAAGATGTCCAAAATGCAACTATTATGTAGAAAAAGTTCATGGATGCACTCAGATTACATGCAGGTGTGGTCATCAATTTTGCTATGGTTGTGGATGCACTTGGACAGGAGGATCCCATTATAAATGTAAAGCTTGA 903 0.3511 MDSQDIDRKTNDQPVVGGVKQFLKKNIWEIVQGNSSSMIDEDKFYDAEENFPIIDDKYVVEIQVMDSEDITPLRNLKQKQKETIEEKYSIQLKQFYCSICMEAKPIKEMFKNPNCSHSFCEDCIGKYLAAKIQENISRVNCPEPNCKGTLEAYYCSSIIPKDAFDRWDNALCENSVLESQKFYCPFKDCSAMLVNDAKEVVTTSECPHCHRLFCAQCRVSWHAGVSCRKFQSLKNNERGGKEDLLAMNLANRKKWKRCPKCNYYVEKVHGCTQITCRCGHQFCYGCGCTWTGGSHYKCKA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04106 300 FunFam RBR-type E3 ubiquitin transferase 92 178 - -
Vivi7g04106 300 SMART ibrneu5 242 298 IPR002867 GO:0008270
Vivi7g04106 300 SMART ibrneu5 165 227 IPR002867 GO:0008270
Vivi7g04106 300 Gene3D - 223 300 - -
Vivi7g04106 300 CDD Rcat_RBR_unk 254 290 - -
Vivi7g04106 300 Pfam RING-type zinc-finger 97 139 IPR027370 -
Vivi7g04106 300 CDD BRcat_RBR_unk 178 227 - -
Vivi7g04106 300 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 74 290 IPR031127 GO:0004842|GO:0016567
Vivi7g04106 300 ProSiteProfiles Zinc finger RING-type profile. 97 142 IPR001841 -
Vivi7g04106 300 SUPERFAMILY RING/U-box 177 231 - -
Vivi7g04106 300 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
Vivi7g04106 300 Pfam IBR domain, a half RING-finger domain 167 227 IPR002867 GO:0008270
Vivi7g04106 300 Pfam IBR domain, a half RING-finger domain 249 296 IPR002867 GO:0008270
Vivi7g04106 300 ProSiteProfiles TRIAD supradomain profile. 93 300 IPR044066 -
Vivi7g04106 300 SUPERFAMILY RING/U-box 243 298 - -
Vivi7g04106 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 178 IPR013083 -
Vivi7g04106 300 SUPERFAMILY RING/U-box 93 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04106 Vivi-Chr7 107848570 107858402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04106 97 287 C3H Transcription Factor Family AT2G19610 28.293 2.87e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04106 K11975 - gmx:100815626 342.813