Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04102 ATGTGCGGTGGTGCTATTATCTCCGACTTCATCCCAGCTACGGCGGCGGTGGGTGGTTCCCGCCGTGTGACTGCTGATATCCTGTGGCCGAATTTGAGGAAAAATGGGTTGAAGAAACCGTTTTTGCTTGACGATGATTTCGAGGCTGGGTTCAGAGAGTTTAAGGATGATTCTGATTTTGATGAGGACGAGGATGACGAGGAAGATGAAGGGTTGATGCTCGGTGTCAAAGGTTTTGGTTTTGCTGCTGGCAACAACAAATCTTCAAGGACCTTCTCTCGTGGATCGAGTGCTGCAAAACCTGTGGCGCCGAAATCAAATGAGCCAGCTGAAAAGGCTACGAAGAGGAAGAGGAAGAATCAGTATAGGGGTATCCGACAGCGTCCTTGGGGAAAGTGGGCTGCTGAGATTCGTGACCCGAGGAAAGGAGTTCGTGTTTGGCTCGGAACATTCAGCACTGCTGAGGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGAATCCGTGGCGCAAAAGCCAAGGTGAATTTCCCTGAAGAGAATCCTAATGCTTCCACAAAACGTGTTAAGGCGAGTCCTGAGACGCAGGTGGTGAATAAGAATCTGAACTCGTTCAAACCGAATGGGAACACAATGTTCAACTTCGGCGAGAATATGGAGAACTTCTATTCCCCTATGGATCAGGTTGAGCAGAAACCCATGGTTAACAACCAGTTTGCTAACGTGGGAGCGTTTCAGGGAAATGGATTTCAGTTTGCTGCTGCTGATGCTAATGCCTACTTCAGTTCTGAACACTCGAGCAATTCGTTCGATTATTCTGATCTAGGTTGGGGCGAACAAGGCCCGAAAACCCCTGAGATTTCGTCTGTGTTTTCCGCTCCTGCTCCTCAGCAAGGCGAAGCTCAGTTCAATCTGCAGCAGTCTAACAATGCTCAGGATATGCTGCCTATGCAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTCGCAGACATCGAATCCCAGCTGAAGTTCTTCGAGAACTCGTTTGATGATAACTGGAGTGATGCTTCATTGGCGTCATTGCTCGGTACTGATTCAGTTCAGGATTGTGGAAACACAATGAACCTCTGGAGCTTTGATGACATGCCCGCCATCTCCGGCGGAGTTTTCTGA 1155 0.4874 MCGGAIISDFIPATAAVGGSRRVTADILWPNLRKNGLKKPFLLDDDFEAGFREFKDDSDFDEDEDDEEDEGLMLGVKGFGFAAGNNKSSRTFSRGSSAAKPVAPKSNEPAEKATKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGAKAKVNFPEENPNASTKRVKASPETQVVNKNLNSFKPNGNTMFNFGENMENFYSPMDQVEQKPMVNNQFANVGAFQGNGFQFAAADANAYFSSEHSSNSFDYSDLGWGEQGPKTPEISSVFSAPAPQQGEAQFNLQQSNNAQDMLPMQDDSAKTLSEELADIESQLKFFENSFDDNWSDASLASLLGTDSVQDCGNTMNLWSFDDMPAISGGVF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04102 384 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Vivi7g04102 384 Coils Coil 322 342 - -
Vivi7g04102 384 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Vivi7g04102 384 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Vivi7g04102 384 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Vivi7g04102 384 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Vivi7g04102 384 PANTHER DNA-BINDING DOMAIN 93 296 IPR044808 GO:0003700|GO:0009873
Vivi7g04102 384 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Vivi7g04102 384 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Vivi7g04102 384 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Vivi7g04102 384 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Vivi7g04102 384 MobiDBLite consensus disorder prediction 88 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04102 Vivi-Chr7 107708002 107710629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04102 1 384 AP2-EREBP Transcription Factor Family AT3G14230 43.447 5.92e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi7g04102 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04102 K09286 - gmx:100818646 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04102 7 107708002 107710629 Vivi7g04102 7 107708002 107710629 ECH