Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04088 ATGGATAGTGAAGGAAACAAAAGCAATGATTTTTATGCGGTTTTGGGATTGAATAAAGAATGCACTGATTCTGAGCTTAGGAATGCTTATAAGAAACTTGCAATGAAATGGCACCCAGATCGTTGTTCAGCTTCAGGAAATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCGATTCAAGAGGCCTATTCTGTTTTATCTGACGCGAATAAGAGGTTAATGTACGACGTTGGAGTTTACGACAATGATGATGATGAAAATGGTATGGGTGATTTTTTGAATGAAATGGTTACAATGATGAGCCAAACTACATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAGCAATTGTTTAGTGATATGTTTCAAGCAGATATTGGATTAGATGGAAGCAATTCTATGAACTCTTCTGGTTGCTCAACTTCATCTAGTTTCATGAATTATAATGAAAGTTCTAATTCTAATAAACGCAATTCCAACCAGATGAATTATGGAATGGCAGGGGATTCGTCTAGCTTCGATGCTAATTATCAGAACTTCTGTTTTGGGACAGGTGAAGCGCCATCAAGAAGATGCGGTGGAGAAGGAAAAAGGGGGAATTCAAGGAGGAGGAGGTAG 630 0.3841 MDSEGNKSNDFYAVLGLNKECTDSELRNAYKKLAMKWHPDRCSASGNVKFVEEAKKKFQAIQEAYSVLSDANKRLMYDVGVYDNDDDENGMGDFLNEMVTMMSQTTSNENGEESFEELQQLFSDMFQADIGLDGSNSMNSSGCSTSSSFMNYNESSNSNKRNSNQMNYGMAGDSSSFDANYQNFCFGTGEAPSRRCGGEGKRGNSRRRR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04088 209 CDD DnaJ 10 70 IPR001623 -
Vivi7g04088 209 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vivi7g04088 209 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Vivi7g04088 209 Gene3D DnaJ domain 7 137 IPR036869 -
Vivi7g04088 209 MobiDBLite consensus disorder prediction 143 172 - -
Vivi7g04088 209 Pfam DnaJ domain 10 78 IPR001623 -
Vivi7g04088 209 PRINTS DnaJ domain signature 12 30 IPR001623 -
Vivi7g04088 209 PRINTS DnaJ domain signature 73 92 IPR001623 -
Vivi7g04088 209 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vivi7g04088 209 PRINTS DnaJ domain signature 30 45 IPR001623 -
Vivi7g04088 209 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Vivi7g04088 209 PANTHER PUTATIVE, EXPRESSED-RELATED 3 181 - -
Vivi7g04088 209 SMART dnaj_3 9 73 IPR001623 -
Vivi7g04088 209 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04088 Vivi-Chr7 107476561 107479510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04088 12 78 C2H2 Transcription Factor Family AT1G74250 40.299 4.74e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04088 - - lja:Lj3g3v2576120.1 330.102