Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04087 ATGGATAGTGAAGGAAACAAAAGCAATGATTTTTATGCGGTTTTGGGATTGAATAAAGAATGCACTGATTCTGAGCTTAGGAATGCTTATAAGAAACTTGCAATGAAATGGCACCCAGATCGTTGTTCAGCTTCAGGAAATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCGATTCAAGAGGCCTATTCTGTTTTATCTGACGCGAATAAGAGGTTAATGTACGACGTTGGAGTTTACGACAATGATGATGATGAAAATGGTATGGGTGATTTTTTGAATGAAATGGTTACAATGATGAGCCAAACTACATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAGCAATTGTTTAGTGATATGTTTCAAGCAGATATTGGATTAGATGGAAGCAATTCTATGAACTCTTCTGGTTGCTCAACTTCATCTAGTTTCATGAATTATAATGAAAGTTCTAATTCTAATAAACGCAATTCCAACCAGATGAATTATGGAATGGCAGGGGATTCGTCTAGCTTCGATGCTAATTATCAGAACTTCTGTTTTGGGGTCAATCTTGTAAATTATCATTACCAATGA 591 0.3621 MDSEGNKSNDFYAVLGLNKECTDSELRNAYKKLAMKWHPDRCSASGNVKFVEEAKKKFQAIQEAYSVLSDANKRLMYDVGVYDNDDDENGMGDFLNEMVTMMSQTTSNENGEESFEELQQLFSDMFQADIGLDGSNSMNSSGCSTSSSFMNYNESSNSNKRNSNQMNYGMAGDSSSFDANYQNFCFGVNLVNYHYQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04087 196 PANTHER PUTATIVE, EXPRESSED-RELATED 3 178 - -
Vivi7g04087 196 CDD DnaJ 10 70 IPR001623 -
Vivi7g04087 196 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vivi7g04087 196 Gene3D DnaJ domain 7 138 IPR036869 -
Vivi7g04087 196 Pfam DnaJ domain 10 78 IPR001623 -
Vivi7g04087 196 PRINTS DnaJ domain signature 12 30 IPR001623 -
Vivi7g04087 196 PRINTS DnaJ domain signature 30 45 IPR001623 -
Vivi7g04087 196 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vivi7g04087 196 PRINTS DnaJ domain signature 73 92 IPR001623 -
Vivi7g04087 196 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Vivi7g04087 196 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Vivi7g04087 196 SMART dnaj_3 9 73 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04087 Vivi-Chr7 107476561 107479511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04087 12 78 C2H2 Transcription Factor Family AT1G74250 40.299 4.19e-11 59.3