Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04078 ATGCTCGAAGAAACCCATCGAAGCTTCTCCAACCTCTCACTCAGAAACAACGCAAAAAATCGCATAGTTGATGATAAGGGTATGGCTACTACTGAGATGAGTTCGGAAGTGGTTAAGATCGGTGCAGTTTCTGTTGATGATGAAAGTTTTGAACTAGTTCAGAAGTTAATAAAGGATGGATTGCTAGAGAAACTGAAAGTGGACCAATGCAAGGTGTATTTGAAGAAGAATGGTTTGAGGTTAACTGGAAATAAAGATATACTTATCCAGCGTATAAAGGAACATCAAGAGATTATAAATAGTGGAGGGGAGAAAAAATACCCGCCTCATAGCTTTGTTTTGAATTGTAAAGGTGACGCATGCACCGGTGATGTTGTTTTGTTTGAGCAGAATGTGTATGAAATGTTCAACATAGCATCTAGGAGTGCCAGCGGTCCTCCGTGTGGCACAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCCAAACAACAGCATACATTTACGATTGAAGTGCTATGGAGCAAGGGAGAGAAGCCTCTACCTCCCCTTCATCCTCTACTGATAAAGGGTCGAAACCTTTATCGGTTGAAGACTTTGAGACAGAGATGGGAAGATGAAGAGAAAAGGCGGAATATGTTAATGGAAAAACACTCTCGGGGATTCGTTGCTAGGGCAGATAGGGAAGCTAGGATACAAGAAAAGGAGCTGAGAAAATCAATGAAGGAAAATAGGATCTCCAAAAAGGCTTCTGGGAAGAACCAATTCCAAACACATTCACAAAATCAACCTCGAGAAACAAAAAATGTATTCATTACTTCAACATCTTCAACTGTACCTAAACCAGCTGCGGTAACTGAACAGCATGTTCGATCAATTGATTCTCGAACTGTTGCAATGGGATCTAATCAGTTCAGAAATTCAGGAAACTCGACTTTTAGTGCAAACTGCCATTCTGCTGTCAACGATTTCAGAGACAAACCGATTAGCATCGAGAGAAACCATCCTTCCATTGTTGAAACAAACAACTTTGCAGAGAGAAATTTTCATCCAAGGAAGCCTTTGACAAGTGCGAATCATATTTTTGCAGGTCTGCCGAATGCAAATCACATGCATGCAGGGCTTCCAAACCGAAAAAGCTATCTGCAAAAACAGTTTTGTAGACATTTTGCTAGGGGAAGATGCCATTTTGGAGATAACTGCAAGTTCTTGCATGGTTAG 1230 0.4114 MLEETHRSFSNLSLRNNAKNRIVDDKGMATTEMSSEVVKIGAVSVDDESFELVQKLIKDGLLEKLKVDQCKVYLKKNGLRLTGNKDILIQRIKEHQEIINSGGEKKYPPHSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGTRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQRWEDEEKRRNMLMEKHSRGFVARADREARIQEKELRKSMKENRISKKASGKNQFQTHSQNQPRETKNVFITSTSSTVPKPAAVTEQHVRSIDSRTVAMGSNQFRNSGNSTFSANCHSAVNDFRDKPISIERNHPSIVETNNFAERNFHPRKPLTSANHIFAGLPNANHMHAGLPNRKSYLQKQFCRHFARGRCHFGDNCKFLHG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04078 409 MobiDBLite consensus disorder prediction 253 271 - -
Vivi7g04078 409 ProSiteProfiles SAP motif profile. 62 96 IPR003034 -
Vivi7g04078 409 SUPERFAMILY CCCH zinc finger 386 409 IPR036855 GO:0046872
Vivi7g04078 409 Coils Coil 226 246 - -
Vivi7g04078 409 MobiDBLite consensus disorder prediction 242 271 - -
Vivi7g04078 409 ProSiteProfiles Zinc finger C3H1-type profile. 384 409 IPR000571 GO:0046872
Vivi7g04078 409 Gene3D SAP domain 53 109 IPR036361 -
Vivi7g04078 409 PANTHER SAP DOMAIN-CONTAINING PROTEIN 43 349 - -
Vivi7g04078 409 Pfam SAP domain 62 95 IPR003034 -
Vivi7g04078 409 Coils Coil 200 220 - -
Vivi7g04078 409 Gene3D - 377 409 - -
Vivi7g04078 409 SUPERFAMILY SAP domain 53 96 IPR036361 -
Vivi7g04078 409 Pfam CCCH-type zinc finger 390 409 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04078 Vivi-Chr7 107375712 107378809 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi7g04078 SAP 4.2e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04078 - - gmx:100815642 453.751