Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04068 ATGCAGAATCATAGGTTGAAGCAACAGCATCAGCAACAACAACAGCAACAAGCTATGATGCAACAAGCGCTTCTTCAACAACACTCCCTATACCACCCTGGTCTCCTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGCAACGTTCATACCCAGGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCAGGTACTGGCCCAGTTGAAGGGTGTAAACTTTTCAGAAAAGAGAAGTCCTCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTGGCCATATTAACTCTCAATGGAAGACATCTTTTTGGGCAACCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCCGAGGTTACTGATGCTACACTTTTTGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAGTCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGGCGGCATTGAAGAGAAGCAAACCCCAGAAAACAAAACTGTGGTGGAACTAACAAATGGCTCATCTGAGGATGGTAAAGAGACACCTATCAACAATGATGCTCCTGAGAACAATCCTCAGTATACAACTGTTTATGTGGGTAACCTTGGTTCTGAGGCAACACAGCTTGATCTCCATCGTCATTTCTATACCCTTGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGATTTGGGTTTGTGAGGTTTAGTACTCACGCTGAAGCAGCTCTGGCAATTCAGATGGGAAATGCCCAGTCTTATCTCTGCGGAAAACTAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCCGGAACCGCTTCAAATCCTCTTCCTCCACCTGCTGCAGCGCCTTTGCCAGGTCTGTCTGCAACTGATATTCTGACCTACGAGAGGCAGATAGCAATGAGCAAGATGGGTGGTGTTCACGCTGCATTGATGCATCCCCAAGCGCAGCATCCTCTTAAGCAGGCCGCAATTGGAGCAAGCCAGGCGATATATGACGGCGGGTTCCAAAATGTTGCTGCTGCACAGCAAATGATGTACTACCAGTAA 1278 0.4695 MQNHRLKQQHQQQQQQQAMMQQALLQQHSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQTPENKTVVELTNGSSEDGKETPINNDAPENNPQYTTVYVGNLGSEATQLDLHRHFYTLGAGVIEEVRVQRDKGFGFVRFSTHAEAALAIQMGNAQSYLCGKLIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDILTYERQIAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04068 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 222 IPR000504 GO:0003723
Vivi7g04068 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 40 344 - -
Vivi7g04068 425 SUPERFAMILY RNA-binding domain, RBD 138 224 IPR035979 GO:0003676
Vivi7g04068 425 CDD RRM1_PUB1 61 131 - -
Vivi7g04068 425 FunFam oligouridylate-binding protein 1B-like isoform X2 1 141 - -
Vivi7g04068 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 216 IPR000504 GO:0003723
Vivi7g04068 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 325 IPR000504 GO:0003723
Vivi7g04068 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 127 IPR000504 GO:0003723
Vivi7g04068 425 SMART rrm1_1 267 337 IPR000504 GO:0003723
Vivi7g04068 425 SMART rrm1_1 145 218 IPR000504 GO:0003723
Vivi7g04068 425 SMART rrm1_1 60 129 IPR000504 GO:0003723
Vivi7g04068 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 133 IPR000504 GO:0003723
Vivi7g04068 425 SUPERFAMILY RNA-binding domain, RBD 258 348 IPR035979 GO:0003676
Vivi7g04068 425 SUPERFAMILY RNA-binding domain, RBD 43 137 IPR035979 GO:0003676
Vivi7g04068 425 FunFam oligouridylate-binding protein 1-like isoform X2 142 237 - -
Vivi7g04068 425 MobiDBLite consensus disorder prediction 243 263 - -
Vivi7g04068 425 Coils Coil 3 23 - -
Vivi7g04068 425 Gene3D - 141 232 IPR012677 -
Vivi7g04068 425 Gene3D - 1 140 IPR012677 -
Vivi7g04068 425 CDD RRM2_PUB1 143 222 - -
Vivi7g04068 425 Gene3D - 242 345 IPR012677 -
Vivi7g04068 425 FunFam Oligouridylate-binding protein 1C 242 345 - -
Vivi7g04068 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 341 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04068 Vivi-Chr7 107281696 107286395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04068 54 342 Eukaryotic Initiation Factors Gene Family AT1G22760 26.316 2.86e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04068 K13201 - gmx:100781227 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04068 7 107281696 107286395 Vivi7g04068 7 107281696 107286395 ECH