Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04012 ATGATGAGTAGTAGTGCAAGTTCAAGAAATAGGTCACCTTTTACACCAAATCAATGGCAAGAGCTTGAACAACAAGCCCTTGTTTTCAAATACATGGTTACAGGTACACCTATTCCTCCAGATCTTATCTTCTCCATCAAAAGAAGCTTGGACAGTTCTATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAGTACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTAGTTGTGTCTTCTTCATCATCAACAACATCAACAAACACAAACACAATCTCTCTATCTCAATCTCAACCTCAACCTCAATCTCAATCTCAAACCAATACCAGAAACCTCTCCTTGAACAACAGTTCCACCTTAACCTCACCTTCTTCTTTTCCTTTTCATGAACCTCAACATCAACATCAACAACACTTTTCTCAACCCTACCAAAACCCTTACTTCAATTATTCTCAGCAATCTATCACTGGCTCTAAACCTCTTGATCATTCTGAGTTTCAACCTCATCATGATGGTTCTACTACTCATCACCTCTTTCTGGATTCTGGATCTTATTCTCAGGATGAAAAAGACTATAGGAGGCATGTGCAAGTTCAAGGGATAAGAGATGGAACTGTGGATGAAAGAACTTTCTTTCCAGAAGCTTCTGGTTCTTCTAGGAGTTATCATGATCCATATCAACAACAACAACTGAATTCCTTTAAGTCATCATCATATGCAAGCTCACAATTTCAGAACATCAATGATGATAATCCAAGACAGCAACAACAACAGCAACAACAAGAACAACACTGTTTTGTTTTAGGCACAGACTTCAAATCAACAAGACCAACAACAAACAAGGACAAAGAAAGTGAGACAACTCAGAAACCTCTTCATCATTTCTTTGGTGAGTGGACACCAAAGAACACAGATTCTTGGCTAGATCTTGCTTCCAACTCCAGAATTCCAACAGATGAATGA 1101 0.3951 MMSSSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDSSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVELVVSSSSSTTSTNTNTISLSQSQPQPQSQSQTNTRNLSLNNSSTLTSPSSFPFHEPQHQHQQHFSQPYQNPYFNYSQQSITGSKPLDHSEFQPHHDGSTTHHLFLDSGSYSQDEKDYRRHVQVQGIRDGTVDERTFFPEASGSSRSYHDPYQQQQLNSFKSSSYASSQFQNINDDNPRQQQQQQQQEQHCFVLGTDFKSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTDE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04012 366 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Vivi7g04012 366 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi7g04012 366 MobiDBLite consensus disorder prediction 105 366 - -
Vivi7g04012 366 MobiDBLite consensus disorder prediction 258 321 - -
Vivi7g04012 366 MobiDBLite consensus disorder prediction 351 366 - -
Vivi7g04012 366 PANTHER GROWTH-REGULATING FACTOR 5 11 354 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi7g04012 366 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi7g04012 366 MobiDBLite consensus disorder prediction 120 207 - -
Vivi7g04012 366 MobiDBLite consensus disorder prediction 229 248 - -
Vivi7g04012 366 MobiDBLite consensus disorder prediction 322 337 - -
Vivi7g04012 366 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi7g04012 366 Pfam WRC 79 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04012 Vivi-Chr7 106250978 106253058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04012 1 344 GRF Transcription Factor Family AT3G13960 38.861 7.11e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi7g04012 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04012 - - aprc:113851425 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04012 7 106250978 106253058 Vivi7g04012 7 106250978 106253058 ECH