Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04011 ATGATGAGTAGTAGTGCAAGTTCAAGAAATAGGTCACCTTTTACACCAAATCAATGGCAAGAGCTTGAACAACAAGCCCTTGTTTTCAAATACATGGTTACAGGTACACCTATTCCTCCAGATCTTATCTTCTCCATCAAAAGAAGCTTGGACAGTTCTATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAGTACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTAGTTGTGTCTTCTTCATCATCAACAACATCAACAAACACAAACACAATCTCTCTATCTCAATCTCAACCTCAACCTCAATCTCAATCTCAAACCAATACCAGAAACCTCTCCTTGAACAACAGTTCCACCTTAACCTCACCTTCTTCTTTTCCTTTTCATGAACCTCAACATCAACATCAACAACACTTTTCTCAACCCTACCAAAACCCTTACTTCAATTATTCTCAGCAATCTATCACTGGCTCTAAACCTCTTGATCATTCTGAGTTTCAACCTCATCATGATGGTTCTACTACTCATCACCTCTTTCTGGATTCTGGATCTTATTCTCAGGATGAAAAAGACTATAGGCATGTGCAAGTTCAAGGGATAAGAGATGGAACTGTGGATGAAAGAACTTTCTTTCCAGAAGCTTCTGGTTCTTCTAGGAGTTATCATGATCCATATCAACAACAACAACTGAATTCCTTTAAGTCATCATCATATGCAAGCTCACAATTTCAGAACATCAATGATGATAATCCAAGACAGCAACAACAACAGCAACAACAAGAACAACACTGTTTTGTTTTAGGCACAGACTTCAAATCAACAAGACCAACAACAAACAAGGACAAAGAAAGTGAGACAACTCAGAAACCTCTTCATCATTTCTTTGGTGAGTGGACACCAAAGAACACAGATTCTTGGCTAGATCTTGCTTCCAACTCCAGAATTCCAACAGATGAATGA 1098 0.3944 MMSSSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDSSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVELVVSSSSSTTSTNTNTISLSQSQPQPQSQSQTNTRNLSLNNSSTLTSPSSFPFHEPQHQHQQHFSQPYQNPYFNYSQQSITGSKPLDHSEFQPHHDGSTTHHLFLDSGSYSQDEKDYRHVQVQGIRDGTVDERTFFPEASGSSRSYHDPYQQQQLNSFKSSSYASSQFQNINDDNPRQQQQQQQQEQHCFVLGTDFKSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTDE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04011 365 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Vivi7g04011 365 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi7g04011 365 MobiDBLite consensus disorder prediction 105 227 - -
Vivi7g04011 365 MobiDBLite consensus disorder prediction 321 336 - -
Vivi7g04011 365 PANTHER GROWTH-REGULATING FACTOR 5 11 353 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi7g04011 365 MobiDBLite consensus disorder prediction 244 365 - -
Vivi7g04011 365 MobiDBLite consensus disorder prediction 257 320 - -
Vivi7g04011 365 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi7g04011 365 MobiDBLite consensus disorder prediction 120 207 - -
Vivi7g04011 365 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi7g04011 365 MobiDBLite consensus disorder prediction 350 365 - -
Vivi7g04011 365 Pfam WRC 79 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04011 Vivi-Chr7 106250975 106253071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04011 1 343 GRF Transcription Factor Family AT3G13960 39.206 7.91e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi7g04011 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04011 - - aprc:113851425 450.284