Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04009 ATGAGTAACTGGTTAGGATTTTCTCTCACTCCACACTTTGGTGAAGAATTTGCTACAGAAAACCATAACCATAACCAGAATCAAAACCATGGTGAAGGTTCAGAAACTGGAAGAAACTATGTTTCTTCTTCTTCTCATCATCAACATCATCAACACCTTTCTGTTATGCCTCTACGATCTGATGGTTCACTTTGTGTTTCTGATTCCTTTACACCTCAAGAATGGAGATATGAGAATGCAATAACTGGTGGAAATTCAAATGAAGAAGGACCAAAACTTGAAGATTTTTTAGGCTGTTACTCAAACCAAAGCCAGAATAGTACTAATATTTCCAAAATCAATGTTAATGTTTCACCAAGTTTTTGCACCAACAATAACACAGAGATTGAAACAGGAGAGAATCATCATAATCACAATCACAATCACAATCACAATCACAATCATAATAATCACAATCACCTAACAAACCAATCTTTGATTCACTCTTTCCATCATCCATATAACAATAACACCAACAATCATCATGCTTTAATCAATAATAGCCCTTTGTACAAGTCTTGGATGACTCAGACTCAGTTTTCTGAAGGGAAAAGTTCCAATAATGGAAATGGTTGTAGCTTTCAATCTCTTAATCTAACTATGAGTCCAAGTGTTTCAAATGGTGTTAGTGTTGGTGCAGTTTCTAATGTTCAGATGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTGGTTCTGCTGCTAGAGAACCTGTCCCTCGCAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGATTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAAAAGGAACTTGAAGAAATGAAGAACATGACTAGGCAAGAATTTGTGGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGAATCGGACGGGTTGCGGGAAACAAAGACTTGTATCTTGGTACATTTAGCACGCAAGAAGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAGTTTAGAGGAACAAGTGCTGTGACCAATTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATCGCGGGAGATCTCGCGAAACGGTCACCTAAGGAACCTGCGCCTCCTGCTACAGCCGCTGCCGAGGACTTCAATCCGTGCGGCAGTACGTCGACGTCGACACCTTCTCAGCCGCCTCCTCTAGCTATTACCGATGGCGAACAACAGCATTCTGATGAATTGTCCAACATGGTGTGGAATTCGAACAAGGACGAACAACCACCACCGCAGAACGAGTGCGGAAACAACGCCAACGTCGTCGCAGAATCGTCGCAACACGGTTCGCCGAGCAACAAGAATGAGATGAACCCTCAAAGTCTTAAATTACCTAATGAGTTTGGAGGGAGTGGAGCAGATTATGGACATGGTTACTTCACATTGCAAGGACCAAAGTTTGATGATGGAAACAATGAAAATGACCACATGAATAACAATAGGCTTGGGAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1788 0.4066 MSNWLGFSLTPHFGEEFATENHNHNQNQNHGEGSETGRNYVSSSSHHQHHQHLSVMPLRSDGSLCVSDSFTPQEWRYENAITGGNSNEEGPKLEDFLGCYSNQSQNSTNISKINVNVSPSFCTNNNTEIETGENHHNHNHNHNHNHNHNNHNHLTNQSLIHSFHHPYNNNTNNHHALINNSPLYKSWMTQTQFSEGKSSNNGNGCSFQSLNLTMSPSVSNGVSVGAVSNVQMNEDPRKRSLSKSGSAAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKEPAPPATAAAEDFNPCGSTSTSTPSQPPPLAITDGEQQHSDELSNMVWNSNKDEQPPPQNECGNNANVVAESSQHGSPSNKNEMNPQSLKLPNEFGGSGADYGHGYFTLQGPKFDDGNNENDHMNNNRLGNLGLVNQVPMFALWNE 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04009 595 SMART rav1_2 365 429 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 SMART rav1_2 266 335 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 MobiDBLite consensus disorder prediction 134 153 - -
Vivi7g04009 595 MobiDBLite consensus disorder prediction 22 51 - -
Vivi7g04009 595 ProSiteProfiles AP2/ERF domain profile. 266 329 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 FunFam AP2-like ethylene-responsive transcription factor 364 425 - -
Vivi7g04009 595 CDD AP2 364 425 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 MobiDBLite consensus disorder prediction 462 541 - -
Vivi7g04009 595 CDD AP2 265 331 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 Pfam AP2 domain 266 321 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 Pfam AP2 domain 364 415 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 91 509 - -
Vivi7g04009 595 SUPERFAMILY DNA-binding domain 364 425 IPR016177 GO:0003677
Vivi7g04009 595 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 PRINTS Ethylene responsive element binding protein signature 405 425 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 MobiDBLite consensus disorder prediction 444 545 - -
Vivi7g04009 595 SUPERFAMILY DNA-binding domain 265 331 IPR016177 GO:0003677
Vivi7g04009 595 ProSiteProfiles AP2/ERF domain profile. 365 423 IPR001471 GO:0003700|GO:0006355
Vivi7g04009 595 MobiDBLite consensus disorder prediction 229 261 - -
Vivi7g04009 595 MobiDBLite consensus disorder prediction 22 54 - -
Vivi7g04009 595 Gene3D AP2/ERF domain 265 331 IPR036955 GO:0003700|GO:0006355
Vivi7g04009 595 Gene3D AP2/ERF domain 365 425 IPR036955 GO:0003700|GO:0006355
Vivi7g04009 595 FunFam AP2-like ethylene-responsive transcription factor ANT 265 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04009 Vivi-Chr7 106166214 106169579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04009 1 448 AP2-EREBP Transcription Factor Family AT1G72570 48.441 7.50e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi7g04009 AP2 1.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04009 K09285 - gmx:100809762 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04009 7 106166214 106169579 Vivi7g04009 7 106166214 106169579 ECH