Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04008 ATGAGTAACTGGTTAGGATTTTCTCTCACTCCACACTTTGGTGAAGAATTTGCTACAGAAAACCATAACCATAACCAGAATCAAAACCATGGTGAAGGTTCAGAAACTGGAAGAAACTATGTTTCTTCTTCTTCTCATCATCAACATCATCAACACCTTTCTGTTATGCCTCTACGATCTGATGGTTCACTTTGTGTTTCTGATTCCTTTACACCTCAAGAATGGAGATATGAGAATGCAATAACTGGTGGAAATTCAAATGAAGAAGGACCAAAACTTGAAGATTTTTTAGGCTGTTACTCAAACCAAAGCCAGAATAGTACTAATATTTCCAAAATCAATGTTAATGTTTCACCAAGTTTTTGCACCAACAATAACACAGAGATTGAAACAGGAGAGAATCATCATAATCACAATCACAATCACAATCACAATCACAATCATAATAATCACAATCACCTAACAAACCAATCTTTGATTCACTCTTTCCATCATCCATATAACAATAACACCAACAATCATCATGCTTTAATCAATAATAGCCCTTTGTACAAGTCTTGGATGACTCAGACTCAGTTTTCTGAAGGGAAAAGTTCCAATAATGGAAATGGTTGTAGCTTTCAATCTCTTAATCTAACTATGAGTCCAAGTGTTTCAAATGGTGTTAGTGTTGGTGCAGTTTCTAATGTTCAGATGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTGGTTCTGCTGCTAGAGAACCTGTCCCTCGCAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGACAAGTTTATCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGATTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAAAAGGAACTTGAAGAAATGAAGAACATGACTAGGCAAGAATTTGTGGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGAATCGGACGGGTTGCGGGAAACAAAGACTTGTATCTTGGTACATTTAGCACGCAAGAAGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAGTTTAGAGGAACAAGTGCTGTGACCAATTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATCGCGGGAGATCTCGCGAAACGGTCACCTAAGGAACCTGCGCCTCCTGCTACAGCCGCTGCCGAGGACTTCAATCCGTGCGGCAGTACGTCGACGTCGACACCTTCTCAGCCGCCTCCTCTAGCTATTACCGATGGCGAACAACAGCATTCTGATGAATTGTCCAACATGGTGTGGAATTCGAACAAGGACGAACAACCACCACCGCAGAACGAGTGCGGAAACAACGCCAACGTCGTCGCAGAATCGTCGCAACACGGTTCGCCGAGCAACAAGAATGAGATGAACCCTCAAAGTCTTAAATTACCTAATGAGTTTGGAGGGAGTGGAGCAGATTATGGACATGGTTACTTCACATTGCAAGGACCAAAGTTTGATGATGGAAACAATGAAAATGACCACATGAATAACAATAGGCTTGGGAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1797 0.4057 MSNWLGFSLTPHFGEEFATENHNHNQNQNHGEGSETGRNYVSSSSHHQHHQHLSVMPLRSDGSLCVSDSFTPQEWRYENAITGGNSNEEGPKLEDFLGCYSNQSQNSTNISKINVNVSPSFCTNNNTEIETGENHHNHNHNHNHNHNHNNHNHLTNQSLIHSFHHPYNNNTNNHHALINNSPLYKSWMTQTQFSEGKSSNNGNGCSFQSLNLTMSPSVSNGVSVGAVSNVQMNEDPRKRSLSKSGSAAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKEPAPPATAAAEDFNPCGSTSTSTPSQPPPLAITDGEQQHSDELSNMVWNSNKDEQPPPQNECGNNANVVAESSQHGSPSNKNEMNPQSLKLPNEFGGSGADYGHGYFTLQGPKFDDGNNENDHMNNNRLGNLGLVNQVPMFALWNE 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04008 598 MobiDBLite consensus disorder prediction 134 153 - -
Vivi7g04008 598 FunFam AP2-like ethylene-responsive transcription factor 367 428 - -
Vivi7g04008 598 MobiDBLite consensus disorder prediction 22 51 - -
Vivi7g04008 598 MobiDBLite consensus disorder prediction 465 544 - -
Vivi7g04008 598 CDD AP2 265 334 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 SUPERFAMILY DNA-binding domain 367 428 IPR016177 GO:0003677
Vivi7g04008 598 Gene3D AP2/ERF domain 368 428 IPR036955 GO:0003700|GO:0006355
Vivi7g04008 598 Gene3D AP2/ERF domain 265 334 IPR036955 GO:0003700|GO:0006355
Vivi7g04008 598 ProSiteProfiles AP2/ERF domain profile. 266 332 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 ProSiteProfiles AP2/ERF domain profile. 368 426 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 PRINTS Ethylene responsive element binding protein signature 408 428 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 Pfam AP2 domain 266 324 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 Pfam AP2 domain 367 418 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 SMART rav1_2 368 432 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 SMART rav1_2 266 338 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 MobiDBLite consensus disorder prediction 447 548 - -
Vivi7g04008 598 CDD AP2 367 428 IPR001471 GO:0003700|GO:0006355
Vivi7g04008 598 FunFam AP2-like ethylene-responsive transcription factor ANT 265 334 - -
Vivi7g04008 598 MobiDBLite consensus disorder prediction 229 261 - -
Vivi7g04008 598 MobiDBLite consensus disorder prediction 22 54 - -
Vivi7g04008 598 SUPERFAMILY DNA-binding domain 265 334 IPR016177 GO:0003677
Vivi7g04008 598 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 89 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04008 Vivi-Chr7 106166213 106169579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04008 1 451 AP2-EREBP Transcription Factor Family AT1G72570 49.064 1.44e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vivi7g04008 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04008 K09285 - gmx:100809762 791.186