Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04006 ATGGGTAGAATTCATAAGGAGATTAATAAAGGTGCTTGGTCTCGCGAAGAAGATGATATTCTCTCTAAATATGTTGCCATTCATGGAGAAGGAAAATGGCAAAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGCGGAAAAAGTTGTCGACAAAGATGGTTGAATTATCTAAAACCAGGTATAAAGAGAGGCGACATTTCTCCGGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGTCTTTGATAGCTAAGAGATTACCAGGACGAACAGACAATGAAATCAAGAACTATTGGAATACGAATCTATCAAAGAAGCTACAAAAACAACATACATCATCATCATTTTCTGTCTCACTTCAAAACAAATATAGTCATGTTGCACCAGAAGCTCCAAGGCCAAGGAGATTGAAGATTGTTCATCAACACAACAAAATTTTAGAGAATAAGAATGGAAGTGAATGCGATCAAGGAAGTGATGAAACCTCAATCGCCGATTTCCTCATTGACAATGATCATCAAGACAATTTGTTGGTTGATGATGATGAGTCCAACACTACAAACTCAAAGATTCCACAAATAGAAGAAGATCACAAGAAGGTAGTTTCAACCAATAGTACTCATAGCTCATCATCACCTTCTGATCATTTTCATCTTGTATCAGAGAAATTTGATCCTCTAGATAGCCTTTTGGATGTGGAGCTCAAGAAGATGGCTTCTTTTCTTGGACTTGAAAATGATTGA 759 0.3715 MGRIHKEINKGAWSREEDDILSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISPDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQHTSSSFSVSLQNKYSHVAPEAPRPRRLKIVHQHNKILENKNGSECDQGSDETSIADFLIDNDHQDNLLVDDDESNTTNSKIPQIEEDHKKVVSTNSTHSSSSPSDHFHLVSEKFDPLDSLLDVELKKMASFLGLEND 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04006 252 FunFam Transcription factor TT2 66 135 - -
Vivi7g04006 252 Gene3D - 3 63 - -
Vivi7g04006 252 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vivi7g04006 252 SMART sant 62 110 IPR001005 -
Vivi7g04006 252 SMART sant 9 59 IPR001005 -
Vivi7g04006 252 CDD SANT 12 57 IPR001005 -
Vivi7g04006 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Vivi7g04006 252 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 203 - -
Vivi7g04006 252 FunFam MYB-related transcription factor 9 62 - -
Vivi7g04006 252 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Vivi7g04006 252 Gene3D - 67 137 - -
Vivi7g04006 252 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Vivi7g04006 252 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Vivi7g04006 252 CDD SANT 67 108 IPR001005 -
Vivi7g04006 252 MobiDBLite consensus disorder prediction 182 222 - -
Vivi7g04006 252 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vivi7g04006 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04006 Vivi-Chr7 106156641 106158168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04006 7 112 MYB Transcription Factor Family AT5G40330 66.981 1.47e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g04006 Myb_DNA-binding 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04006 K09422 - gmx:547568 309.686