LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g03989	ATGCACATCATTAGTGTATTTTTTATTTGTCTCTCATTCACGTTGACATTGAAAGCTGAAGCAACAAACACAAACTCTTCATATCCATTAACATTCCAATCCTGTCATGTTCCTCAAATTCACAAACGTGATGTCTTCATTAGCTTTCGCGGTCCAGATATTCGCCACGGTTTTCTTGCTCATTTGGTTGAAGCTTTGTCCCAGAAGAAAATCACTTTCTTCATAGACAATAAGCTTGTAAAAGGAGACGAAATAGCAGAATCACTTGTTGAAGCAATCGAAACATCTTCGATTTCTTTGGTTATATTCTCTGAAAACTATGCTTCTTCATCGTGGTGTTTGGATGAGTTGGTGAAGATTGTGGAGTGTAGGGAGAAAAAAGGACAGGTTTTGTTGCCGGTTTTCTATAAAGTGGACCCCAGAGTTGTGAGGCATCAAAATGGAAGTTATGGAATTGAATTTGATGAACATGAGATGAAATATAGTAAGAGCAAGGTGCGACAATGGAGATATGCTTTGAAGAAAGCAGCAGATGTCAGTGGGTTTCATTCATCAAATTATGTAAATGATGCAGAGCTTATAAAAGAAATAGTTAAAAATGTGTTGAAGAGGTTGGATCAAGTGCGTCAATTTAGCTCAAAACAGCTTGTTGGAATTGGAAAACAAATATCCCAAGTGGAATCACTGTTAAAACTAGATTCACAAGATGTTCATGTTATTGGAATATGGGGGATGAATGGTATAGGCAAAACAACTATTGCACAGGTGATATATGACATGCTATATTCAGACTATGAAGGTTCATACTTCAAGGCTGAGATAAGAAAAGAATGGGGAACACATGGACATATGTATTTAAAGAGAGATCTTTTTTCCACTTTACTTGCGGAACAAGATTTGAAAATTGATACGCAACATGGATTGCCCTATTTTGTCGAGAGGAGGCTTCGTCGTATGAAGGTTCTCGTTGTTCTTGACGATGTCAATGATCCACAGCAACTAGAAATTTTAATTGGAAACCTTGATTGGTTTGGTAAAGGCAGTAGAATCGTCGTAACAACATGTGACAAGCAAGTACTTGCCAAGATGGTTGCTGCTAAGGATATATATGAGGTTAAGGCATTAGACACTGATGACTCTCTTAGTCTTTTCAATTTGTATGCCTTTGAACAAAACCAAACATATGAAAAGGAGTACTATGAGTTGTCCAAGAAGCTTGTCAAGTACGCCAATGGAATTCCACTTGTTCTTAGAATTTTGGGTGAACATCTTTATAGACAAGATAAAAGTATATGGAAAAGCAAGTTGACGAAGCTTAAAAAAGCTCCGATTAAAAAAATTGATGATATTATCAAGTTGAGTTACGACGATCTAGATTGTCATGAGCAGATGATACTTTTGGACATTGCGTGTTTTTTAGAAGGACTGCGTCTTAAAGTTGACGACATAAAACTGTTGTTAAATGATCATGGTGATTCGATGGGTTTTGAGTTAGAAAGACTGAAAAATAAAGCTCTTATAACTATTTCTCCGGATGATGTTGTGTCCATGCATAGCATTATACAAGAAACAGCTTGGGGAATTGTTCGCAAAGAATCCAATAAAGATCCTGGACATCAAAGTCACCTACTCGATCCTTCTGATATTAAAGAAGTACTTGAAAATAACAAGGGAAGTAGGGCTATTAGAAGCATAGCTACCGACTTGTCGATAATAAAGGATCTGAAGTTAAACCCCGAAGTGTTTTCTAAGATGATCAAACTACAATATCTGGATATTTATAGTAAAGGGTACTTTTACGTGTTTCTCCAATTTCCGTGGAGCTCGTATCTTCCTCAAGGGCTTGAATCTTTGCCAAATGAACTCAAATATCTTCGATGGGCATATTACCCTTTGGAGTCCTTACCGTCTAAGTTTACTGCGGAGAAACTTGTTGTGTTAAACTTGCAGTACAGCCAAGTGAAAAAACTTTGGCATGGAGATAAGGATGTTGTGAATTTAAAGGAACTAATACTGACTTTATCTACAAACCTGGTGGAGCTTCCAGACTTGTCAAGGGCTAAAAATCTTGCAACGATCGATCTTCGCGCGTGTGTGCGATTGACTAGTATACATCCATCTGTGTTTACTCTCAACAAGCTTGAGAAATTGGATCTAGGTGGATGTTTTTCCCTCACAAGCCTCAAAAGCAACATCCATTTGAGTTCCCTTCGTTATCTATCCCTTGCCGGTTGCACTGCACTAGAGGAGTTCTCAGTAACTTCAAAGGAAATGGTAATTTTAAATTTAGAATTCACAGGTATCAAAAAACTATCATCTTCTATTGGACTCCAAAAGAAACTTGAAAAGTTGCTTCTTTCACACAGTTCCATTGAGAACTTGCCTAAAAGCATGAGGCATCTTTCTATGCTGAGACATCTAGAGTTACGAAATTGTTGGAACCTTCGAAGTCTACCAAGGCTACCGTTATCATTGATAACTCTAGATGCAAGTGATTGTGTATCATTGGAGAATGTAACTTTCCCTTCAACTTCTCTTCAAATGTTAAAGGAAAACAAAACAAGGGTTGCCTTCTGGAATTGCCTGAAACTGGATCAACATTCTCTGAAAGAAATAGAATTGAATGCACAGATTAACATGATGAAACTTGCACACAAGCAAATATCTACATCTAGTGATGATCATAATTATGATGCTCAAGGCACTTATGTGTATCCAGGAAGCAGTGTTCCAAAATGGCTGGTGTATAGGACAAAAGGTGATTCCATGACTATTGATCTCTCTTTTGTGAATCATTCCTCTGATCAACTGGCCTTTGTTTTTTGCTTCATTGTTCCACAAATCGAATCACAGGGTTTCATTTTGAGATTTAATATTAGTATTGATGGTGACGATGAAAATATTCAAGTTTACTTGGATAGACCTAGTCTTGGAATTAAATCAGATCATGTGTATCTACTGTATGATCAAGGTTTGTCTCGCTATCTAAATAGTCGGGTGAAAAATCAGTCAAAGTTCAAAATTAAGGTTACTGTGGAATCAGGAACACCGAAATCAGGGTACATGCAAGAAATGTTGTTGAGAGGAGTAGGGGTCAGCCCAATAAACAGCTCACAGTATCTCAATTTCATTCAACACATGGAAGTTAATGCTGAAGGTCCAATTTATTTACCGAGTATGGCAATTTATATACTTTTCACAATTTACATAGGGTTACTTATACAGATAACTTTTCTATGCTTCTAG	3246	0.3709	MHIISVFFICLSFTLTLKAEATNTNSSYPLTFQSCHVPQIHKRDVFISFRGPDIRHGFLAHLVEALSQKKITFFIDNKLVKGDEIAESLVEAIETSSISLVIFSENYASSSWCLDELVKIVECREKKGQVLLPVFYKVDPRVVRHQNGSYGIEFDEHEMKYSKSKVRQWRYALKKAADVSGFHSSNYVNDAELIKEIVKNVLKRLDQVRQFSSKQLVGIGKQISQVESLLKLDSQDVHVIGIWGMNGIGKTTIAQVIYDMLYSDYEGSYFKAEIRKEWGTHGHMYLKRDLFSTLLAEQDLKIDTQHGLPYFVERRLRRMKVLVVLDDVNDPQQLEILIGNLDWFGKGSRIVVTTCDKQVLAKMVAAKDIYEVKALDTDDSLSLFNLYAFEQNQTYEKEYYELSKKLVKYANGIPLVLRILGEHLYRQDKSIWKSKLTKLKKAPIKKIDDIIKLSYDDLDCHEQMILLDIACFLEGLRLKVDDIKLLLNDHGDSMGFELERLKNKALITISPDDVVSMHSIIQETAWGIVRKESNKDPGHQSHLLDPSDIKEVLENNKGSRAIRSIATDLSIIKDLKLNPEVFSKMIKLQYLDIYSKGYFYVFLQFPWSSYLPQGLESLPNELKYLRWAYYPLESLPSKFTAEKLVVLNLQYSQVKKLWHGDKDVVNLKELILTLSTNLVELPDLSRAKNLATIDLRACVRLTSIHPSVFTLNKLEKLDLGGCFSLTSLKSNIHLSSLRYLSLAGCTALEEFSVTSKEMVILNLEFTGIKKLSSSIGLQKKLEKLLLSHSSIENLPKSMRHLSMLRHLELRNCWNLRSLPRLPLSLITLDASDCVSLENVTFPSTSLQMLKENKTRVAFWNCLKLDQHSLKEIELNAQINMMKLAHKQISTSSDDHNYDAQGTYVYPGSSVPKWLVYRTKGDSMTIDLSFVNHSSDQLAFVFCFIVPQIESQGFILRFNISIDGDDENIQVYLDRPSLGIKSDHVYLLYDQGLSRYLNSRVKNQSKFKIKVTVESGTPKSGYMQEMLLRGVGVSPINSSQYLNFIQHMEVNAEGPIYLPSMAIYILFTIYIGLLIQITFLCF	1081

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g03989	1081	SUPERFAMILY	"Winged helix" DNA-binding domain	445	553	IPR036390	-
	Vivi7g03989	1081	FunFam	Disease resistance protein (TIR-NBS-LRR class)	39	207	-	-
	Vivi7g03989	1081	PRINTS	Disease resistance protein signature	239	254	-	-
	Vivi7g03989	1081	PRINTS	Disease resistance protein signature	315	329	-	-
	Vivi7g03989	1081	PRINTS	Disease resistance protein signature	410	424	-	-
	Vivi7g03989	1081	PRINTS	Disease resistance protein signature	709	725	-	-
	Vivi7g03989	1081	Pfam	NB-ARC domain	227	456	IPR002182	GO:0043531
	Vivi7g03989	1081	Gene3D	-	374	459	IPR042197	-
	Vivi7g03989	1081	Gene3D	-	40	203	IPR035897	-
	Vivi7g03989	1081	Gene3D	Ribonuclease Inhibitor	553	755	IPR032675	-
	Vivi7g03989	1081	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	44	752	IPR044974	GO:0006952
	Vivi7g03989	1081	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	208	469	IPR027417	-
	Vivi7g03989	1081	Gene3D	-	204	373	IPR027417	-
	Vivi7g03989	1081	Pfam	TIR domain	44	214	IPR000157	GO:0007165
	Vivi7g03989	1081	ProSiteProfiles	TIR domain profile.	41	205	IPR000157	GO:0007165
	Vivi7g03989	1081	Gene3D	Ribonuclease Inhibitor	756	903	IPR032675	-
	Vivi7g03989	1081	SUPERFAMILY	Toll/Interleukin receptor TIR domain	42	182	IPR035897	-
	Vivi7g03989	1081	SUPERFAMILY	L domain-like	567	863	-	-
	Vivi7g03989	1081	SMART	till_3	42	179	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g03989	Vivi-Chr7	105912827	105917817	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g03989	44	819	WRKY Transcription Factor Family	AT4G12020	34.347	1.20e-102	354

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g03989	-		-	mtr:11419915	1455.27