LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g03979	ATGCTACCTGGTAGCATATTCAGAAGAACATTCTCAATTGAAATCATGTGTTTTATTGTTTGTCTCTTGCTTGTTTCCCTATTAGGTGAAGCAGCAACAGCATCAGCACCAGCAACAACAAACATCAAAGATTCTGTGATATTTAATCCTCAGATTAAGTACGATGTTTTTGTTAGCTTCCGAGGATCAGACATACGCCAAGGTTTTCTTAGTCATTTAATTGAAGCTATCACTCGAAAGAAAATCTTTGCCTTCGTTGATACTAAGGTTCATAAAGGAGATAAAATATCGCCATCACTTGTTCAAGCAATTAAAACATCTTTGATTTCTTTGGTTATATTCTCTGAAAACTATGCTTCTTCATCGTGGTGTTTGGATGAACTTGTTAAAATTGTTGAATGCAAACACAAAGATGGACAGATTATATTACCTGTTTTCTTCAAAGTAACTCCAACAGATGTAAGGCATCAAAAGGGATCTTATGCAGTTGAATTTGCTAAGCATGAAAAAAAATACAATTTGAGCAGGGTGCAGCAGTGGAGATCTGCTTTGAAGGAATCTGGTAATATCTTAGGATATCACGCATCAAATTTTCCGAGTGGCGCTTTACTTGTTGAAGAAATAATTAGTGATGTGATGAAGAGGTTGGATCATGTGAAACAAGTTCACTCAAAGGGTCTTATTGGAGTTGGCAAACAAATTCCACATGTGGAATCGTTGTTAAAAAAAGGGTCAAAAGATGTCCGCGCCATAGGAATTTGGGGGATGAGTGGTATAGGCAAAACAACTATTGCAGAACAAGTATATAGCAGGCTTTGTTCTGAATATGAAGGTTGTTACTTTAAGGCTAATGTAAGAGAAGAATGGGGAAGACATGGAGCTATGAAATTAAAGAATGATCTTTTTTCTACTTTATTAGGTGAACAAGATTTGAAAATTGATACACCGCATGGATTGCCCGGTTTTGTAGAGAGGAGGCTTCGTCGTATGAAGGTTCTTCTTGCTCTCGATGATGTTAATGATATACAGCAACTAGAAGTTTTAATTGAAACACTTGATTGGTTTGGAAAAGGCAGTAGAATCATCATAACAACAAGAGATAAGCAAGTACTGGTCAATATGGTTGATGATAATGATATATATGAGGTTAAAGCATTAGACTTTGATGACTCTTTTAGGCTTTTCACTTTGAATGCTTTTGGACAAAATCATTTTAAAAAAGAGTACTATGAGTTGTCCGACAAGATGGTCAATTATGCTAAAGGCATTCCATTAGTTCTTGAAGTTTTGGGTCGACATCTTCGTGGAAAAGATAAAAAAATATGGGAAAGTCAGCTACTGAGGCTAACGAAAGTACCAATTAAAAGGGTCAACAATGTTGTTAACTTGAGTTACAATGGTCTTGATCGTCATGAGAAGAAGATACTCTTGGACATTGCATGTTTTTTCGATGGACTGCATCTCAAAGTTGATCAGATAAAACTGTTGGTGAAAGATCATGGGTATTCAGTAGATGTTGAGTTAGAAAGTCTCAAAAATAAAGCTCTTATAACTATTTCCCAAGATAATGTTATATCCATGCATAGCATTATACAAGAAACGGCTTGGGAAATTGTTCGCGAAGAATCCATCGACGACCCTGGAAAGCAAAGTCGTCTACTGGATCCTGATGATATTTATCATGTGCTGAAAAGTAACAAGGGGAGTGAGGTAATTAGAAGCTTAGCTATCGACTTGTCGATAATTAAGGATCTGCAGTTAAATCCAAAGGTGTTTGAAAAAATGAACAGACTACAATACCTGGATATTTATAGTAAGGGATACTCATGTGATGTTGTTCAGAGTAGAGGAGGCTTGTATCTTCCGCAAGGGCTTGAATCTTTGCCAAATGAACTCAGATACCTCCGTTGGGCACATTTCCCATTGGAGTCCTTACCATCCAACTTTTCTAGTGAAAAACTTGTTGTATTGGACTTGCAGCATAGCCGGGTGAGAAAACTTTGGCATGAAGATAAGGATCTTGTGAATTTAAAATATCTTAAACTTGGTTTATCCAAACAACTGGTGGAGCTTCCAGACTTGTCAAATGCTACAAATCTTGAAGTAATTGATCTTCGTGTCTGTACAGGGTTGATTAGTGTACATCCATCTGTCTTTACACTCAATAAGCTTGAGAAATTGGACCTGGGTGGATGCATTTCCCTCAGAAGCTTTCGAAGCAATATCCATTTAAGTTCCCTTCGTTATCTCTCTCTTGCTGGTTGTAGAGCACTAAAAGAGTTCTCAGTAACCTCAAAGGAAATGGTAAAGTTGAATTTAGAACTCACACGTATCAAACAACTACCATCAATTGGACTTCTAACCAAACTTGAAAAGCTGCTTCTAGCACAAAGTTACATTGAGAACTTGGCTGAAAGCATCAAGCTTCTTACAAGGTTGAGACATCTAGACTTACGATATTGTTGGAAGCTTCGAAGTCTACCAGAGCTTCCTTCGTCGTTGATAACTCTAGATGCCAGTGGTTGTGAATCATTGGAGAATGTAACTTTCCCTTCAACTGCTCTCCAGATGTTAAAGGAAAACAAGACAAGGGTTGCCTTTTGGAATTGCCTGAAACTGGATGAACATTCTCTCAAGGCAATAGGGTTGAATGCTAAAATTAACATGATGAAATTTGCACACAAGCATATATCCATATCTCGTCACAATTATGATGCCCAAGGCACATACGTGTACCCGGGAAGCAATGTTCCGGAATGGTTGGTGTATAGGACAACAGGTGATTACATGACTATTGATCTCTCTTTTGCTAACCATTCCTCTTCATTAGGCTTCATTTTTTGCTTCATTGTTCCACAAGTTCCATCACAGGGTTTCATTTTGAGATTTAATATCGGTGTTGATGAAGGTGAAGATATCCAATGGTACTTGGATAGGCCGAGTAATGAAATTAAATCAGATCATGTGTACTTAATATATGACGTAGGTTTTTCTCGCTATCTCAGTAACAGAGTCAAAGATCAGCCAAAGTTCAAAATTAAGGTTACTGCAGAATCACGCACATTAACATCAGAGTACGAGTCATTAATGATGTTGAGAGGGTTTGGGGTCAGCCCAATAAGCACCTCACAATATTTCAATCTCATTCAACACATAGAAGTGGCTGAAGGTCCAAGTATCCCAACCCAAAATTTATTATTGAGTATTGCTTACAGCCTCTTACTACCAATTTGCATAGAGTTATTCCTTAAGTTTGTTCTATGA	3264	0.3747	MLPGSIFRRTFSIEIMCFIVCLLLVSLLGEAATASAPATTNIKDSVIFNPQIKYDVFVSFRGSDIRQGFLSHLIEAITRKKIFAFVDTKVHKGDKISPSLVQAIKTSLISLVIFSENYASSSWCLDELVKIVECKHKDGQIILPVFFKVTPTDVRHQKGSYAVEFAKHEKKYNLSRVQQWRSALKESGNILGYHASNFPSGALLVEEIISDVMKRLDHVKQVHSKGLIGVGKQIPHVESLLKKGSKDVRAIGIWGMSGIGKTTIAEQVYSRLCSEYEGCYFKANVREEWGRHGAMKLKNDLFSTLLGEQDLKIDTPHGLPGFVERRLRRMKVLLALDDVNDIQQLEVLIETLDWFGKGSRIIITTRDKQVLVNMVDDNDIYEVKALDFDDSFRLFTLNAFGQNHFKKEYYELSDKMVNYAKGIPLVLEVLGRHLRGKDKKIWESQLLRLTKVPIKRVNNVVNLSYNGLDRHEKKILLDIACFFDGLHLKVDQIKLLVKDHGYSVDVELESLKNKALITISQDNVISMHSIIQETAWEIVREESIDDPGKQSRLLDPDDIYHVLKSNKGSEVIRSLAIDLSIIKDLQLNPKVFEKMNRLQYLDIYSKGYSCDVVQSRGGLYLPQGLESLPNELRYLRWAHFPLESLPSNFSSEKLVVLDLQHSRVRKLWHEDKDLVNLKYLKLGLSKQLVELPDLSNATNLEVIDLRVCTGLISVHPSVFTLNKLEKLDLGGCISLRSFRSNIHLSSLRYLSLAGCRALKEFSVTSKEMVKLNLELTRIKQLPSIGLLTKLEKLLLAQSYIENLAESIKLLTRLRHLDLRYCWKLRSLPELPSSLITLDASGCESLENVTFPSTALQMLKENKTRVAFWNCLKLDEHSLKAIGLNAKINMMKFAHKHISISRHNYDAQGTYVYPGSNVPEWLVYRTTGDYMTIDLSFANHSSSLGFIFCFIVPQVPSQGFILRFNIGVDEGEDIQWYLDRPSNEIKSDHVYLIYDVGFSRYLSNRVKDQPKFKIKVTAESRTLTSEYESLMMLRGFGVSPISTSQYFNLIQHIEVAEGPSIPTQNLLLSIAYSLLLPICIELFLKFVL	1087

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g03979	1087	Gene3D	Ribonuclease Inhibitor	765	889	IPR032675	-
	Vivi7g03979	1087	Gene3D	-	385	469	IPR042197	-
	Vivi7g03979	1087	Gene3D	-	220	384	IPR027417	-
	Vivi7g03979	1087	PRINTS	Disease resistance protein signature	250	265	-	-
	Vivi7g03979	1087	PRINTS	Disease resistance protein signature	742	758	-	-
	Vivi7g03979	1087	PRINTS	Disease resistance protein signature	420	434	-	-
	Vivi7g03979	1087	PRINTS	Disease resistance protein signature	326	340	-	-
	Vivi7g03979	1087	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	216	479	IPR027417	-
	Vivi7g03979	1087	ProSiteProfiles	TIR domain profile.	52	216	IPR000157	GO:0007165
	Vivi7g03979	1087	SMART	till_3	53	190	IPR000157	GO:0007165
	Vivi7g03979	1087	Gene3D	Ribonuclease Inhibitor	561	764	IPR032675	-
	Vivi7g03979	1087	SUPERFAMILY	Toll/Interleukin receptor TIR domain	49	193	IPR035897	-
	Vivi7g03979	1087	FunFam	Disease resistance protein (TIR-NBS-LRR class)	50	218	-	-
	Vivi7g03979	1087	SUPERFAMILY	"Winged helix" DNA-binding domain	456	564	IPR036390	-
	Vivi7g03979	1087	Gene3D	-	51	219	IPR035897	-
	Vivi7g03979	1087	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	54	762	IPR044974	GO:0006952
	Vivi7g03979	1087	Pfam	NB-ARC domain	238	459	IPR002182	GO:0043531
	Vivi7g03979	1087	Pfam	TIR domain	53	220	IPR000157	GO:0007165
	Vivi7g03979	1087	SUPERFAMILY	L domain-like	575	873	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g03979	Vivi-Chr7	105822833	105828135	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g03979	48	829	WRKY Transcription Factor Family	AT4G12020	34.805	6.41e-117	395

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g03979	-		-	mtr:11419915	1394.79