Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03978 ATGGCATTTTCATCTTCTCAACAAATGTATCTCCCCATTGGGATTCTAATCATTGGAGTACCAGTAATTGCTTTTATATTTTTCTGTCTCACAATGTTAGGATGGTGCAAGATTACCAATCACGAATCAACTCTTCCTACAACACGCATAACTTTCGATGAGAAACTTTCTGCTTGCATGAGTTTAGAGTCTAATTCAATCACATTCATGTACAAGGAAGGCGGTGATGTTGCACATGGCATAAACCAGACTGAGTGTGTTATCTGTTTAACAGTCTTTCGACAAGACGAAAGTGTTCGCAAGCTTCACACTTGCAAGCACATGTTTCATACATCTTGCATCGATAAGTGGCTTTGTTCTCGTTCTGGCTGTCCACTGTGCCGCTCGCAGATTGACCAAATAACTTTGCCAAATTATGCAGTGGCAAATGAACATATGACTGTGGACATTGTTGACTCTAGAATTTGA 468 0.3996 MAFSSSQQMYLPIGILIIGVPVIAFIFFCLTMLGWCKITNHESTLPTTRITFDEKLSACMSLESNSITFMYKEGGDVAHGINQTECVICLTVFRQDESVRKLHTCKHMFHTSCIDKWLCSRSGCPLCRSQIDQITLPNYAVANEHMTVDIVDSRI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03978 155 SMART ring_2 86 127 IPR001841 -
Vivi7g03978 155 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Vivi7g03978 155 Pfam Ring finger domain 85 128 IPR001841 -
Vivi7g03978 155 SUPERFAMILY RING/U-box 85 134 - -
Vivi7g03978 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 135 IPR013083 -
Vivi7g03978 155 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 132 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03978 Vivi-Chr7 105805025 105805492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03978 55 128 C3H Transcription Factor Family AT2G17450 47.297 1.18e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03978 - - mtr:25500542 227.254