Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03966 ATGAAGCATTCATTGACATGGAGGACTCCTTCTGAATCTGATGTGCAACAATCTTCCATCTCTGAAAATCTTACCTTGAAAATGAGTGTTTTGCCACAACAATGTGAGAAGACTAAGGCCTTAGATTTTCAATTTCAAGATCAAGATTCATCTTCTACTCAATCAACTGATCAATCTTATCTCGAAGTCGGTTCGGGCCAATCAGGTCCAATTTCTGTCCAGTGTAGCAACTCTTCTGCATTCCCTCATACTGAGGTATGCTTTAGTGGCCCGATTGCAGCTCCAAATGGATCACAGAATAATATTCATCATGCTCAGCTAGCAGGAATGGCTCCGGTTCGGGTTCCTTTGCCTCTTGATCTTTGTGAGGAGCCTATATATGTGAACGCGAAGCAATACCATGCTATTATGAGACGTAGAGAGTATCGTGCAAAGCTCGAAGCTCAGAACAAACTCATCAAAAATCGGAAACCATATCTACACGAGTCGCGTCATTTGCATGCGTTGAAGAGAGCTAGAGGCACCGGTGGACGTTTTCTAAACACCAAAAAGCTCCAAGACGGCCTTAATGTTTCCACGACTACTCGATTGAATCCGAATGAAAATGTGTCTGAATCTAAGGCGAATCAAGTAGAAAACAATAGAGAAGGTGCTTCTGCAACCACATGTTCTGATGACACAAGTGCTTCTAATAGTAATGACATGTTCCAACAACATGAATCTGAGTTCAGATCATGTGGTCACCCTTCTCAAATGCAGGGTTTCTCGGCCGATATCGGTAGTGGTGGCGGTGATGGAAATCAAAACCATCTATCGGTCCTTATGTGA 828 0.43 MKHSLTWRTPSESDVQQSSISENLTLKMSVLPQQCEKTKALDFQFQDQDSSSTQSTDQSYLEVGSGQSGPISVQCSNSSAFPHTEVCFSGPIAAPNGSQNNIHHAQLAGMAPVRVPLPLDLCEEPIYVNAKQYHAIMRRREYRAKLEAQNKLIKNRKPYLHESRHLHALKRARGTGGRFLNTKKLQDGLNVSTTTRLNPNENVSESKANQVENNREGASATTCSDDTSASNSNDMFQQHESEFRSCGHPSQMQGFSADIGSGGGDGNQNHLSVLM 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03966 275 Gene3D - 122 183 - -
Vivi7g03966 275 SMART cbf3 121 182 IPR001289 GO:0003700|GO:0006355
Vivi7g03966 275 PRINTS CCAAT-binding transcription factor subunit B signature 125 147 IPR001289 GO:0003700|GO:0006355
Vivi7g03966 275 PRINTS CCAAT-binding transcription factor subunit B signature 156 179 IPR001289 GO:0003700|GO:0006355
Vivi7g03966 275 MobiDBLite consensus disorder prediction 1 20 - -
Vivi7g03966 275 ProSiteProfiles NF-YA/HAP2 family profile. 122 182 IPR001289 GO:0003700|GO:0006355
Vivi7g03966 275 MobiDBLite consensus disorder prediction 191 275 - -
Vivi7g03966 275 ProSitePatterns NF-YA/HAP2 subunit signature. 127 147 IPR018362 GO:0003677|GO:0016602
Vivi7g03966 275 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 241 IPR001289 GO:0003700|GO:0006355
Vivi7g03966 275 MobiDBLite consensus disorder prediction 46 65 - -
Vivi7g03966 275 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 124 179 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03966 Vivi-Chr7 105599068 105601246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03966 11 250 CCAAT-HAP2 Transcription Factor Family AT3G14020 42.606 7.50e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vivi7g03966 CBFB_NFYA 6.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03966 K08064 - gmx:100500765 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03966 7 105599068 105601246 Vivi7g03966 7 105599068 105601246 ECH
Vivi2g07389 2 218149021 218152465 Vivi7g03966 7 105599068 105601246 PCT