Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03965 ATGGACTCGCGCGCTCAGTATAATCCTCGTACCGTTGAAGAGGTTTTTAGGGATTTCAAGGGTCGTCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGATTTCTATAATCAATGTGATCCTGATAAGGAGAATTTGTGCTTATACGGCTTTCCTAGTGAGCAATGGGAAGTTAATTTACCCGCTGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGTGCTCGGAATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGATTGGCTGTCTTTAGTTGCTGTTCACAGTGATTCATGGTTACTTGCTATTGCCTACTATTTCGGAGCCAGGTTCGGGTTTGACAAATCTGACAGGAAGCGCCTTTTCAATATGATCAATGAACTGCCATCAATATTTGAAGTTGTTACTGGTACAGCAAAGAAACAAGTTAAGGAGAAGTCTTCGGTTTCAAACCACAGTGGAAGCAAATCCAAGTCCAGCTCAAAAGTGCGAGCTCCAGAACCTCAGGTTAAGCAAACAAAGGCATTGGAACCTAAAGACGAGGAGGAAGAACTGGACGAGGAAGATGAAGATGAACACGGAGAGACCTTATGTGGTGCATGCGGTGAGCATTATGGAACAGACGAATTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGGAAATGCGTGAAGATCACACCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAACAAGAGAGCTCGCCCATAA 765 0.451 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPDKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLAIAYYFGARFGFDKSDRKRLFNMINELPSIFEVVTGTAKKQVKEKSSVSNHSGSKSKSSSKVRAPEPQVKQTKALEPKDEEEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRARP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03965 254 Pfam PHD-finger 200 248 IPR019787 -
Vivi7g03965 254 CDD PHD_AL_plant 199 249 IPR044104 -
Vivi7g03965 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Vivi7g03965 254 FunFam PHD finger alfin-like protein 192 248 - -
Vivi7g03965 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0006355|GO:0042393
Vivi7g03965 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vivi7g03965 254 SMART PHD_3 199 247 IPR001965 -
Vivi7g03965 254 MobiDBLite consensus disorder prediction 145 169 - -
Vivi7g03965 254 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Vivi7g03965 254 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Vivi7g03965 254 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Vivi7g03965 254 MobiDBLite consensus disorder prediction 145 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03965 Vivi-Chr7 105575005 105578903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03965 5 253 Alfin-like Transcription Factor Family AT3G42790 74.699 2.62e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vivi7g03965 Alfin 3.7e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03965 K26274 - gmx:100794662 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03965 7 105575005 105578903 Vivi2g07379 2 218086439 218090909 ECH
Vivi7g03965 7 105575005 105578903 Vivi7g03965 7 105575005 105578903 ECH
Vivi2g07379 2 218086439 218090909 Vivi7g03965 7 105575005 105578903 PCT