Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03964 ATGGACTCGCGCGCTCAGTATAATCCTCGTACCGTTGAAGAGGTTTTTAGGGATTTCAAGGGTCGTCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGATTTCTATAATCAATGTGATCCTGATAAGGAGAATTTGTGCTTATACGGCTTTCCTAGTGAGCAATGGGAAGTTAATTTACCCGCTGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGTGCTCGGAATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGATTGGCTGTCTTTAGTTGCTGTTCACAGTGATTCATGGTTACTTGCTATTGCCTACTATTTCGGAGCCAGGTTCGGGTTTGACAAATCTGACAGGAAGCGCCTTTTCAATATGATCAATGAACTGCCATCAATATTTGAAGTTGTTACTGGTACAGCAAAGAAACAAGTTAAGGAGAAGTCTTCGGTTTCAAACCACAGTGGAAGCAAATCCAAGTCCAGCTCAAAAGTGCAGCGAGCTCCAGAACCTCAGGTTAAGCAAACAAAGGCATTGGAACCTAAAGACGAGGAGGAAGAACTGGACGAGGAAGATGAAGATGAACACGGAGAGACCTTATGTGGTGCATGCGGTGAGCATTATGGAACAGACGAATTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGGAAATGCGTGAAGATCACACCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAACAAGAGAGCTCGCCCATAA 768 0.4518 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPDKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLAIAYYFGARFGFDKSDRKRLFNMINELPSIFEVVTGTAKKQVKEKSSVSNHSGSKSKSSSKVQRAPEPQVKQTKALEPKDEEEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRARP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03964 255 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Vivi7g03964 255 SMART PHD_3 200 248 IPR001965 -
Vivi7g03964 255 MobiDBLite consensus disorder prediction 145 194 - -
Vivi7g03964 255 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Vivi7g03964 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vivi7g03964 255 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Vivi7g03964 255 CDD PHD_AL_plant 200 250 IPR044104 -
Vivi7g03964 255 MobiDBLite consensus disorder prediction 145 170 - -
Vivi7g03964 255 Pfam PHD-finger 201 249 IPR019787 -
Vivi7g03964 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Vivi7g03964 255 FunFam PHD finger alfin-like protein 193 249 - -
Vivi7g03964 255 PANTHER CPG BINDING PROTEIN 8 254 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03964 Vivi-Chr7 105575005 105578904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03964 5 254 Alfin-like Transcription Factor Family AT3G42790 73.600 1.42e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vivi7g03964 Alfin 3.7e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03964 K26274 - gmx:100170700 449.129