Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03903 ATGGAAAACCAGTTTTTTATGAATGCAGGATTCGAACAGTCACTTCATCCTTCAAATTCTCCAATGCCAACATGGCAATCACTTTCTTCATCCATGGAAGTTCAACCGTCACTACTGAATTCTTCCTCAAACCAATCCCAAGGTTGTTTTTTCAACCCGAATTGGGAAAAGTCAACGGATCAAAATCTCAACTTTGATTCAGCACTCAGTTCAATTGTCTCATCTCCTGCATCGCCCCCGATCGAGAATCTTGTGATGAGAGAATTGATTGGAAAATTGGGAAGTTTTGGTGAGATCTCACAACAACATTCTAAGCTCAACAACAACGTTGTACCAATGCCTGGATTTTCACCTGATCCTGGTTTTGTTCAAAGGGCTGCGAAATTCTCTTGCTTTGGTAGCAAGAGTTTCAATGATAGAAGTAACCATAACCAATTGGTTATGAACAATGTTGAATTACCTCAAAGATCTGTTAATTTAATGGAAAATGGAGCGAAATTACTATCAAGAGTTTCGAGTAGTCCTTCGTTCAATACAATTGGATCTCAAATGGTTAACATAGAGAACAAGAATTCACCATTGCAACAAGAATATGAAGGAATTGAAGTAGGTAATTCTCAAGAAGAATCTACAATCTCTGAGCAAAATACTCCAAATGGCGAAATTGGTGTGAAAGCTTCACTTGACATGAATTCAAGGAAAAGAAAAAGCTCTTCTTTTAAAGGAAAAGCTTCAAACTCTTCCAATCCTACCAAGGGTGGTGAAGACTTAAATGCAAAGAAAAGCAAGTCAAATGAGGGTGGTAAAAATGAAAATGATGGCATGAATATAGAGGAAGATTCCAAAAAAGTTGCTACTAATGCAGAGGAAGAGAAACAGAACAAGAGTAACTCAAAAGCTCCTGAACCTCTAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCAACTGACAGTCATAGTCTTGCCGAACGCGTTCGCAGAGAGAAAATAAGTGAAAGAATGAAACTTCTTCAAGATCTCGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTACAACGGCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCTGTTAACACAAGTATTGAAAGTGTTGTTGTATCAAAAGATATATTTCAAGCAAATAATTCATTGCAAAACTCAATATTCCAAATAGATTCTTCAGCACCATCTTTTTATGGGACACAAACCCAACAAAATCAAGTTATTCATAGTAACATTCCTAATGGAAGTGGGACACATTGCTTAGTGGATTCATTGGATTCTTCTTTGTGCCATAATCTTGGCATGCATTTACCTTTACTAAATGGATTTAATGAAAATGGATCTCAGTTTCCTTTAACATTTTCTGAAGAGGACTTAAACACCATTGTTCAGATGGGATTTGGCCAAACTTCAAACAGGGAAACACCAATACACTCACCAAGTTTCAACGATTCAAATCAAGCAACACAAATGAAAATTGAACTCTAA 1539 0.3639 MENQFFMNAGFEQSLHPSNSPMPTWQSLSSSMEVQPSLLNSSSNQSQGCFFNPNWEKSTDQNLNFDSALSSIVSSPASPPIENLVMRELIGKLGSFGEISQQHSKLNNNVVPMPGFSPDPGFVQRAAKFSCFGSKSFNDRSNHNQLVMNNVELPQRSVNLMENGAKLLSRVSSSPSFNTIGSQMVNIENKNSPLQQEYEGIEVGNSQEESTISEQNTPNGEIGVKASLDMNSRKRKSSSFKGKASNSSNPTKGGEDLNAKKSKSNEGGKNENDGMNIEEDSKKVATNAEEEKQNKSNSKAPEPLKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTSIESVVVSKDIFQANNSLQNSIFQIDSSAPSFYGTQTQQNQVIHSNIPNGSGTHCLVDSLDSSLCHNLGMHLPLLNGFNENGSQFPLTFSEEDLNTIVQMGFGQTSNRETPIHSPSFNDSNQATQMKIEL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03903 512 MobiDBLite consensus disorder prediction 204 278 - -
Vivi7g03903 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 366 IPR011598 GO:0046983
Vivi7g03903 512 MobiDBLite consensus disorder prediction 10 29 - -
Vivi7g03903 512 MobiDBLite consensus disorder prediction 241 255 - -
Vivi7g03903 512 MobiDBLite consensus disorder prediction 204 222 - -
Vivi7g03903 512 Gene3D - 313 391 IPR036638 GO:0046983
Vivi7g03903 512 CDD bHLH_AtBPE_like 306 385 - -
Vivi7g03903 512 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 207 422 IPR024097 GO:0006355
Vivi7g03903 512 MobiDBLite consensus disorder prediction 489 512 - -
Vivi7g03903 512 FunFam Basic helix-loop-helix transcription factor 313 385 - -
Vivi7g03903 512 SMART finulus 322 372 IPR011598 GO:0046983
Vivi7g03903 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 383 IPR036638 GO:0046983
Vivi7g03903 512 Pfam Helix-loop-helix DNA-binding domain 320 367 IPR011598 GO:0046983
Vivi7g03903 512 MobiDBLite consensus disorder prediction 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03903 Vivi-Chr7 105064922 105068096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03903 1 471 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.006 5.60e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g03903 HLH 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03903 - - gmx:100812081 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01524 6 68810977 68814654 Vivi7g03903 7 105064922 105068096 PCT