Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03901 ATGGGTATTTCCAGGGATTCTATGCACAAGAGGCGTGAGACTGGAGGAAAGAAGAAGGCATGGAGGAAGAAGAGAAAGTACGAGCTTGGTCGTCAGTCAGCTAACACCAAGCTTTCAAGCAACAAGACCATCCGTAGGATCCGTGTCAGAGGTGGTAATGTTAAGTGGAGAGCCTTGAGGTTGGATACTGGAAACTTTTCCTGGCCAAGTGAGACTGTCACCCGCAAAACCCGTCTCCTCGACGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGTACTCAGACCCTTGTGAAGAGTGCCATTGTTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAACACTATGGTGTTGAAATTGGCAGGAAGAAGAAAACTGCTGGCAAAAAAGACTCTGAGGAGGCAGAGGCTGTTACTGAAGAAGTTAAAAAGAGTGCCCATGTGCAACGTAAACTGGAGCAACGCCAGAAGGATCGTCAGCTTGACCCACACATTGAAGAGCAATTTGGAGGTGGAAGATTGCTGGCATGCATTTCATCCCGACCTGGACAATGTGGCAGAGCTGATGGCTACATTTTGGAAGGTAGAGAGTTGGAATTTTACATGAAGAAGCTCCAGAAGAAGAAGGGCAAGGGTGCTGCTTGA 651 0.4793 MGISRDSMHKRRETGGKKKAWRKKRKYELGRQSANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNFSWPSETVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAGKKDSEEAEAVTEEVKKSAHVQRKLEQRQKDRQLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGRELEFYMKKLQKKKGKGAA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03901 216 PANTHER 40S RIBOSOMAL PROTEIN S8 1 213 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vivi7g03901 216 MobiDBLite consensus disorder prediction 1 26 - -
Vivi7g03901 216 NCBIfam ribosomal protein eS8 1 197 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vivi7g03901 216 FunFam 40S ribosomal protein S8 109 174 - -
Vivi7g03901 216 FunFam 40S ribosomal protein S8 160 213 - -
Vivi7g03901 216 CDD Ribosomal_S8e_like 5 195 - -
Vivi7g03901 216 Gene3D Ribosomal protein S8e, subdomain 108 174 IPR042563 -
Vivi7g03901 216 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Vivi7g03901 216 Gene3D - 27 211 - -
Vivi7g03901 216 Pfam Ribosomal protein S8e 5 195 IPR022309 -
Vivi7g03901 216 FunFam 40S ribosomal protein S8 32 159 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03901 1 204 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.415 1.38e-122 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03901 K02995 - gmx:100500112 360.918