Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03893 ATGGAAAGGTATAAAATTTTGAAAGAGCTTGGACATGGTTCTTGCGGTCATGTATATAAAGCCCGTGATATGAGAACTTTTGAGATTGTTGCTGTCAAAAGGTTGAAAAGAAAATTTTGCTTTTGGGAAGAATACACAAATTTAAGAGAAGTTAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAGAGAAGTTGTTAAAGAAAATAATGAACTCTTTTTAATTTTTGAATACATGGATTGCAATCTTTATCAATTAATAAAAGAGAAAGAAAAACCCTTTTCAGAGGAAGAGATACGATGCTTTATGAAGCAAGTGCTCCATGGACTTAGTCACGTGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGAAAATTTGCTGGTGACCAATGATGTTCTTAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCAATGCCTCCATATACTCAATATGTTTCCACACGGTGGTACAGAGCTCCTGAAGTTTTGTTGCAGTCCGCATGTTATACTCCTGCTGTTGACATGTGGGCTATTGGTGCTATACTAGCTGAGCTTTTTACTTTGACCCCCATATTTCCTGGTGAAAGTGAAATAGATCAACTATACAAAATATACTGCATTCTTGGTACGCCAGATTCAACTTGTTTCACCATAGGTGCAAACAACTCTAGGCTATTGGACTTTGTAGGCCACGATGTTGTTCCACCTATGAAGCTTTCTGATATCATTCCAAATGCTAGCATGGAAGCTATTGATTTGATCACACAATTGTTATCATGGGACCCATCTAGGAGGCCAGATGCAGATCAGTCACTGCAACATCCTTTCTTCCATGTGCATACAAGGGTTCCTCGTTCACTTGGTGATCCACTTGAGCTGAAGCTGAGTAACAAGAGGGCAAAGCCAAATCTTGAGTTGAAATTGTATGATTTTGGCCCTGATCCTGATGATTGTTTTCTTGGCTTGACGTTGGCTGTAAAGCCCAGCGTTTCAAACTTAGATGTGGTCCAAAATGCATCGCGTGGTATGGGAGAGAATATGCTATTTTGCTCGAATTTTAATAATCATCAAGATCAATCAGTTTTTTGGTCATTATTGTCTCCTGATCAGAATGGGGTTCACAACTCAGCAGAGACTTCATTATCATTGTCATTTGGATCTGTTCAACACCAGCCAATTGGAGTTCCACAGACAGCGGGATTTTCTTTTCAGCCTCTGCAGCCTAACATCTTAACTACACCATTTTTGACACCGAGTTCCCCGTTCCAGCGCCGGCATTGTCTTTGA 1308 0.396 MERYKILKELGHGSCGHVYKARDMRTFEIVAVKRLKRKFCFWEEYTNLREVKALRKMNHPNIIKLREVVKENNELFLIFEYMDCNLYQLIKEKEKPFSEEEIRCFMKQVLHGLSHVHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLQSACYTPAVDMWAIGAILAELFTLTPIFPGESEIDQLYKIYCILGTPDSTCFTIGANNSRLLDFVGHDVVPPMKLSDIIPNASMEAIDLITQLLSWDPSRRPDADQSLQHPFFHVHTRVPRSLGDPLELKLSNKRAKPNLELKLYDFGPDPDDCFLGLTLAVKPSVSNLDVVQNASRGMGENMLFCSNFNNHQDQSVFWSLLSPDQNGVHNSAETSLSLSFGSVQHQPIGVPQTAGFSFQPLQPNILTTPFLTPSSPFQRRHCL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03893 435 Gene3D Transferase(Phosphotransferase) domain 1 83 292 - -
Vivi7g03893 435 FunFam Serine/threonine-protein kinase MHK 1 83 - -
Vivi7g03893 435 Pfam Protein kinase domain 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g03893 435 CDD STKc_MAK_like 4 284 - -
Vivi7g03893 435 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 308 - -
Vivi7g03893 435 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Vivi7g03893 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vivi7g03893 435 ProSiteProfiles Protein kinase domain profile. 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g03893 435 FunFam Probable serine/threonine-protein kinase DDB_G0268078 83 292 - -
Vivi7g03893 435 SUPERFAMILY Protein kinase-like (PK-like) 1 285 IPR011009 -
Vivi7g03893 435 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03893 Vivi-Chr7 104960376 104970153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03893 1 310 Core Cell Cycle Gene Families AT1G66750 38.390 5.04e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vivi7g03893 Pkinase 7.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03893 K08829 K08830 gmx:100792842 779.63