Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03835 ATGGAAAATCGTCAAAGAATAACACTCTACGATCAAATAACATCATCAAGTAACACAACAAGCAACACTCGAAGCTCACTCGCAACGTTAATCCAAAACGACGCCGTCTTCGCCATTCAAAAAACCCGAAACCAAACTCTCTTAGACATCATACGAGAAAACGAACCAAACAACGTTGTTGATAACAGCAACAATACAAAAGATCGAAAGTCGTGGAAAGCTTTTAAGGAGTTAGTACTTCGTATAAAGCGTCGTAACTCGGACGAGTCAACTCAACAAGAGCAGCTACAACAACAAGAAAACGATGTCGTTCGGGGAGATCTGAACAATTCGGATCCGGTGGAATTACTCGCCGGCGGTGAGTTCTCCGACGAGGAAATTAACGTGAATAGTTCGGAGACGGTGCAGGTTAGTATGTCGCTGATGGCTTTGTTAGAGGAGAGTGAAATTGATTTGGATCGAATCGGTGATGTTGATGATGAAGGTGATGACGTGGATGAGAAAGGAGAAGAAGAAGAAGAAGGGGATGTTTCGGTGGAACGCAATTGCTGCGTGTGTATGGTGAGGCATAAAGGTGCAGCGTTTATACCGTGTGGACACACGTTTTGCAGGATGTGTTCAAGAGAGCTTTGGGTGAGTAGAGGAAATTGTCCTCTTTGCAATAATTTGATTTTGGAAGTTCTTGATATTTTCTAA 696 0.4296 MENRQRITLYDQITSSSNTTSNTRSSLATLIQNDAVFAIQKTRNQTLLDIIRENEPNNVVDNSNNTKDRKSWKAFKELVLRIKRRNSDESTQQEQLQQQENDVVRGDLNNSDPVELLAGGEFSDEEINVNSSETVQVSMSLMALLEESEIDLDRIGDVDDEGDDVDEKGEEEEEGDVSVERNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNNLILEVLDIF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03835 231 ProSiteProfiles Zinc finger RING-type profile. 183 221 IPR001841 -
Vivi7g03835 231 PANTHER OS01G0917900 PROTEIN 91 231 - -
Vivi7g03835 231 MobiDBLite consensus disorder prediction 91 106 - -
Vivi7g03835 231 MobiDBLite consensus disorder prediction 86 108 - -
Vivi7g03835 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 231 IPR013083 -
Vivi7g03835 231 SMART ring_2 183 220 IPR001841 -
Vivi7g03835 231 Pfam Zinc finger, C3HC4 type (RING finger) 180 224 - -
Vivi7g03835 231 SUPERFAMILY RING/U-box 182 227 - -
Vivi7g03835 231 CDD RING-HC 183 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03835 Vivi-Chr7 104347448 104348412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03835 3 231 C3H Transcription Factor Family AT3G25030 33.333 1.71e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03835 - - cam:101511225 263.077