Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03825 ATGACACAAACAACAATAACAACAACCTCTTCAGAAACAACCACCACGACAACAACCTCAAACTCCTCCACCTCTTCATCTTCTTCACCACCACCCTCACATTCAACCCAAAAACAAACCCCAACAAAGCCCAAAGACAACAACAACAGTAACAATAATAACAAACACCCAACCTACCATGGAGTAAGAAAACGCAGCTGGGGAAAATGGGTGTCCGAAATTCGAGAACCTCGCAAAAAATCACGAATCTGGCTCGGAACATTCTCAACACCAGAAGCTGCAGCTAGAGCACACGACGTAGCAGCTTTAACCATCAAAGGCAAAACCGCAATCCTCAATTTTCCCAATATCTCCAACATGCTTCCTATACCTGCCACGTCAGCACCACGTGACATTCAAGCCGCTGCAACAGCAGCGGCTGCAATGGTTGACTTTGATGTACCTGTCGCGCACGTGACAGAACAATGTTGTTCTGAATCTGACGAGTCACAACAAGAACAAGAACTTAGTCAAATTGTTGAACTTCCTAAAATTAATGAAGGTGAAGATGACTCGGTTGTTGACTCAGCTGGTTCTGAGTTTCTTTTGCTAGATGACTCGGTTGATAGTACTAACTGGGTTTATCATCATCCTCTTACTCCCTCAATTGGCTTCGAAGATGGAATTGAATTCTACGCTACTTTTTCTGATGATTTTTTACTACCCATTTGGGATTGA 717 0.4338 MTQTTITTTSSETTTTTTTSNSSTSSSSSPPPSHSTQKQTPTKPKDNNNSNNNNKHPTYHGVRKRSWGKWVSEIREPRKKSRIWLGTFSTPEAAARAHDVAALTIKGKTAILNFPNISNMLPIPATSAPRDIQAAATAAAAMVDFDVPVAHVTEQCCSESDESQQEQELSQIVELPKINEGEDDSVVDSAGSEFLLLDDSVDSTNWVYHHPLTPSIGFEDGIEFYATFSDDFLLPIWD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03825 238 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Vivi7g03825 238 FunFam Ethylene-responsive transcription factor 2 58 116 - -
Vivi7g03825 238 CDD AP2 59 116 IPR001471 GO:0003700|GO:0006355
Vivi7g03825 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 182 - -
Vivi7g03825 238 MobiDBLite consensus disorder prediction 1 64 - -
Vivi7g03825 238 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Vivi7g03825 238 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Vivi7g03825 238 MobiDBLite consensus disorder prediction 1 57 - -
Vivi7g03825 238 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Vivi7g03825 238 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Vivi7g03825 238 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Vivi7g03825 238 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03825 Vivi-Chr7 104222677 104224089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03825 11 217 AP2-EREBP Transcription Factor Family AT5G11590 43.290 1.77e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi7g03825 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03825 K09286 - gmx:100804056 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03825 7 104222677 104224089 Vivi7g03825 7 104222677 104224089 ECH