Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03819 ATGGCAATGTCCTGCAAGGATGGTAATAAGCATTTAATGGATAATGGAAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTCGAGAGGCTTTATCATGATTGCCCTAAACCGAGTTCAATTCGGAGACAGCAGCTCATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCCAGGCAAATCAAAGTTTGGTTTCAGAATAGAAGGTGTAGGGAGAAGCAGAGGAAGGAGTCTTTTAGGTTGCAAGGTGTGAATAGGAAGTTGACTGCTATGAATAAGCTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCATCTTGTGTATGAGAATGGTTATTTTCGGCAAAATACTCAGAACGCTACCAAAGACACGAGTTGTGAGTCAGTTGTGACGAGTGGTCAACACAATATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGTGGTCTAGTGGGACTTGAACCTACTAGGGTTGCAGAAATCCTCAAAGACCGTCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGACATTGTCAATGTGCTTCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACTACATTGGCACCTGCTCGAGACTTCTGGTTGCTACGCTACACTTCTGTTGTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGCCCAAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCAGACATGTTGCCTAGTGGATACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATTCACATTGTTGATCATATGGACTTAGAGCCTTGGAGCGTGCCGGAAGTACTGCGCCCTTTATATGAATCATCAACAGTGCTGGCTCAAAAGACTACAATGGCGGCCTTACGTCATCTAAGACAGATCTCACATGAAGTTTCTCAGCCCAATGTCTCTGGGTGGGGTAGACGTCCAGCAGCTCTGCGGGCTCTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGACAATGATGGGCAATGATGGTGTAGATGATGTCACTATTCTTGTGAATTCATCACCTGAAAAATTAATGGGTCTGAATCTTTCCTTTGGCAATGGATTCCCTTCTGTCAGTAATGCAGTGTTATGCGCCAAGGCATCGATGCTATTACAGAATGTTCCTCCAGCCATTCTCCTAAGGTTCCTGCGAGAACACAGATCAGAATGGGCAGACAATAACATGGATGCTTACACAGCTGCTGCTATTAAAGTCGGCCCTTGTAGCTTAACAGGGTCTCGCATGGGAAATTATGGGGGTCAAGTTATACTTCCGCTAGCTCACACTATTGAGCATGAGGAGTTTTTGGAAGTCATTAAGTTGGACGGAGTCTCCCATTCTCCTGAAGATGCAATGATGCCCAGAGAATTGTTTCTGTTGCAACTCTGCAGCGGAATGGATGAGAATGCTATTGGCACTTGTGCAGAACTTATATTTGCTCCAATTGATGCTTCATTTGCTGATGATGCCCCACTTCTACCTTCCGGATTTCGCATCATTCCTCTTGAATCTGGAAAAGAAGCTTCCAGCCCTAATCGCACTCTTGACCTTGCATCTGCTCTTGACATTGGCCCCACTGGAAACCGAACTTCGAGTGATAATGCTGGAAATGCTGGTTGTGTAAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCACATGCAAGAGAATGTAGCGTGCATGGCACGGCAATATGTTCGCAGTATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCATCTCATCTGAGTTCACATGCTGGGCTGAGGTCACCATTAGGAACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGATGCTACTTGGGTGTGGAACTACTTAAATCTAATAACGAAGGCAAAGAATCTATACTCAAGTCCTTGTGGCATCACTCAGATGCTGTACTATGCTGCACTCTAAAGGCAATGCCAGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCCTAGTTGCATTACAAGATATAACTTTAGAGAAAATATTCGACGATCATGGTCGAAAAGCACTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTGCAAGGCGGTATTTGTCTCTCAAGCATGGGGCGACCTGTCTCATACGAGAGAGTTGTTGCTTGGAAGGTGCTGAATGATGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2508 0.451 MAMSCKDGNKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNATKDTSCESVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQPNVSGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPEKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLTGSRMGNYGGQVILPLAHTIEHEEFLEVIKLDGVSHSPEDAMMPRELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDIGPTGNRTSSDNAGNAGCVRSVMTIAFEFAFESHMQENVACMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGKESILKSLWHHSDAVLCCTLKAMPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKALFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNDEQNAHCICFMFVNWSFV 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03819 835 Pfam MEKHLA domain 692 834 IPR013978 -
Vivi7g03819 835 CDD START_ArGLABRA2_like 152 367 - -
Vivi7g03819 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 835 IPR044830 GO:0003700
Vivi7g03819 835 Gene3D - 192 370 IPR023393 -
Vivi7g03819 835 SMART START_1 157 367 IPR002913 GO:0008289
Vivi7g03819 835 SMART HOX_1 14 80 IPR001356 GO:0003677
Vivi7g03819 835 ProSiteProfiles START domain profile. 148 362 IPR002913 GO:0008289
Vivi7g03819 835 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Vivi7g03819 835 CDD homeodomain 17 77 IPR001356 GO:0003677
Vivi7g03819 835 Gene3D - 10 81 - -
Vivi7g03819 835 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Vivi7g03819 835 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Vivi7g03819 835 FunFam homeobox-leucine zipper protein ATHB-15 193 374 - -
Vivi7g03819 835 Coils Coil 86 106 - -
Vivi7g03819 835 CDD bZIP 69 108 - -
Vivi7g03819 835 SUPERFAMILY Bet v1-like 157 367 - -
Vivi7g03819 835 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Vivi7g03819 835 Pfam START domain 158 366 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03819 Vivi-Chr7 104113842 104120183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03819 1 787 Homeobox Transcription Factor Family AT1G52150 83.333 0.0 1380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi7g03819 START 1.3e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03819 K09338 - gmx:100800165 1573.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03819 7 104113842 104120183 Vivi7g03819 7 104113842 104120183 ECH
Vivi2g07946 2 229021540 229029191 Vivi7g03819 7 104113842 104120183 PCT