Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03800 ATGTGGCAAAGAAGCATGGAATTGGAGCTTAGACTTGGTCCACCAGGTGAAGAAGAGTGTGTCAATGAAAAAAGCATGAAAAGTGTTAAAAAAGAAAGATATGAAGATGGAGATGAAGAATCATTACTCACTCTTGGTAACTTTTCAAAGAAAGATTCAACTTGTGATTTGTCTAATGCTAAAGGTTCTTCATTTCTTCAACTCTCATCAATGCAAGGAGTTGAAAAAGATGCATCACAATCACAACCATGTTGCACAAACTTGCATGATAAAGAGAAGAAAGCATTCTCACCTTTTACAAAAAAATCAGATTTTCCTAATAGGTCTCAGAAAAGAAATTCAACTAGTACAGCAGTTGGTTGGCCTCCGATTCGTTCTTTCAGGAAGAATATTGCAAGCGGAAGCTCGTCTAAATCACCTACCGAGCCGCGGCATGTGATTCAAGACAAGGTTGCTGCTAGTAACAAACCTATTAGAGACTCTAGTAAAGGTTTGTTTGTGAAGATCAACATGGATGGAGTTCCTATTGGAAGAAAAGTAGACATCAATGCTTATGACACCTATGAAAAACTTTCATCAGCGGTAGATGAACTATTCAAAAGTCTCATTGAAGAGATAAATCTATCACATATTCTCTATTCACAAAGCTGTTCTGCACAAAGAGATTCCTGTGATGATGGAATTGATAACAAACAAGAGGAAGAAAATAAAGCTATGATGAAAGGTTCATTGATTGAAAGTGGAGAATATAGTCTTGTTTATGAAGATAATGAAGGTGACAAGATGCTTGTAGGGGATGTGCCATGGCAAATGTTTGTATCAACAGTGAAGAGGCTGAGAGTGTTCAAGAGTTCTAATCTTCCTGCTTTTAACATTGGTAGTAAGAAAGACTTAGATTGA 900 0.3678 MWQRSMELELRLGPPGEEECVNEKSMKSVKKERYEDGDEESLLTLGNFSKKDSTCDLSNAKGSSFLQLSSMQGVEKDASQSQPCCTNLHDKEKKAFSPFTKKSDFPNRSQKRNSTSTAVGWPPIRSFRKNIASGSSSKSPTEPRHVIQDKVAASNKPIRDSSKGLFVKINMDGVPIGRKVDINAYDTYEKLSSAVDELFKSLIEEINLSHILYSQSCSAQRDSCDDGIDNKQEEENKAMMKGSLIESGEYSLVYEDNEGDKMLVGDVPWQMFVSTVKRLRVFKSSNLPAFNIGSKKDLD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03800 299 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 286 IPR003311 GO:0005634|GO:0006355
Vivi7g03800 299 Pfam AUX/IAA family 7 287 IPR033389 -
Vivi7g03800 299 ProSiteProfiles PB1 domain profile. 164 284 IPR000270 GO:0005515
Vivi7g03800 299 SUPERFAMILY CAD & PB1 domains 160 282 - -
Vivi7g03800 299 Gene3D - 159 295 - -
Vivi7g03800 299 MobiDBLite consensus disorder prediction 96 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03800 Vivi-Chr7 103887802 103890113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03800 168 282 B3 DNA Binding Superfamily AT4G23980 29.565 4.65e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi7g03800 AUX_IAA 4e-64 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03800 K14484 - gmx:100793822 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03800 7 103887802 103890113 Vivi2g07982 2 229768646 229771144 ECH
Vivi7g03800 7 103887802 103890113 Vivi7g03800 7 103887802 103890113 ECH
Vivi2g07982 2 229768646 229771144 Vivi7g03800 7 103887802 103890113 PCT