Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03760 ATGGATGATCTGAATTGGGATGGCTCGGAAGTTTTGGAAGAGAGCGCGCGAATGTTGTGGAATACACATGAGCAACAGAATTTTGAAGGATGCTACAACATAACAAACTCTCTTACTCATCAAATACAAGAGATGCATAAAGTTGAAATTGATCATAGTGCATATTCAAATTCTGAAAGAGTTATGATGCCGAGTAAAAATCTGTTACAGCATGCAACAAGCATGAGAGTGAAATCAAAAGCTGGATCCAGCTGGGAAGAGCCTTTAATACATCAATCAGATCAATCCCTTTTAGTCAATAGACATTACAACATGCCAGATTTCAACTTGGCCCACCAACAACAACAACTCAAATTTAACAACTCTTTTGATTGTTTGCTTTCTGATACTAATAGCAACACTGACACTTCTGTTGAAATTGATGGTGATGGTGGAATTTCAAAGTTGTTTTCTGACAGAAGAAATTTATGGAGCTTCAATTATGTCAGTCCTACATCCTCATCCGGTGAAACCGATACTAATGTTTCAAGCTATGAAGCACGGACACAGAGACAAATATCAGACAAGTTTTCAATCAGAAGTGTTGGTTCAAATGATACAAGTTACGAAACATTGGGACAAACACGCGCACCAGACACACATTCAATCAGAAGCGATGGTTCAAACGGTGTAAGTTATAAAGCACAGACACAAATACAGACACCAGATACATCTTTGATCAGACATGTTGGTAAGAAAGACATGCGGTGTCCACTCACTGTTGAACTTGACGAAACAATGTCTCAAACCTCATCGGATCAATACATCAATCAAAGAAAAGCAATAAAATCAAGTACTATTCATAATTCTTCATCTCTTGAAGGTAGTTTTAGCCTTATCACGGATAAACCACCGAAAACCAAGAAACCGAGATCTAACAAAGAACCTTATTCAACAAACATAAATTTCCAACAACCAAATCCATCATCATCATCATCAATATGCTGTTCATCTTCAACCGAAGAGTCTGACCGAGAAGCAATAGCGCAAATGAAGGAAATGATGTATAGAGCTGCAGCATTTAGGCCAGTGAATTTCGGAATCGATGACATCGATGTGAGTGCAAAAAAGCCTAAGAGAAAGAATGTTAAGATATCAAATGATCCACAGACAGTGGCTGCAAGGCAAAGAAGGGAAAAAATAAGTGACAGGATTAGGGTTTTGCAGAAGATAGTACCTGGTGGAAACAAAATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTTTTAAGGTCACAAATTAAGGCACTTGAAAGTTTTGGTAACAAAGTTAATGCTATGGATTGTAATAATCCAACTAGTATTGCTTTCTCTTTTAATCCTTCTTTTTCCATGCAAATGGTTCCTAGTAGTTACAGTCATCATTCACATGATGATCATCTCTAA 1437 0.3751 MDDLNWDGSEVLEESARMLWNTHEQQNFEGCYNITNSLTHQIQEMHKVEIDHSAYSNSERVMMPSKNLLQHATSMRVKSKAGSSWEEPLIHQSDQSLLVNRHYNMPDFNLAHQQQQLKFNNSFDCLLSDTNSNTDTSVEIDGDGGISKLFSDRRNLWSFNYVSPTSSSGETDTNVSSYEARTQRQISDKFSIRSVGSNDTSYETLGQTRAPDTHSIRSDGSNGVSYKAQTQIQTPDTSLIRHVGKKDMRCPLTVELDETMSQTSSDQYINQRKAIKSSTIHNSSSLEGSFSLITDKPPKTKKPRSNKEPYSTNINFQQPNPSSSSSICCSSSTEESDREAIAQMKEMMYRAAAFRPVNFGIDDIDVSAKKPKRKNVKISNDPQTVAARQRREKISDRIRVLQKIVPGGNKMDTASMLDEAANYLKFLRSQIKALESFGNKVNAMDCNNPTSIAFSFNPSFSMQMVPSSYSHHSHDDHL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03760 478 CDD bHLH_AtIND_like 379 436 - -
Vivi7g03760 478 MobiDBLite consensus disorder prediction 307 337 - -
Vivi7g03760 478 Pfam Helix-loop-helix DNA-binding domain 388 427 IPR011598 GO:0046983
Vivi7g03760 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 378 427 IPR011598 GO:0046983
Vivi7g03760 478 SMART finulus 384 433 IPR011598 GO:0046983
Vivi7g03760 478 MobiDBLite consensus disorder prediction 203 233 - -
Vivi7g03760 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 437 IPR036638 GO:0046983
Vivi7g03760 478 Gene3D - 383 445 IPR036638 GO:0046983
Vivi7g03760 478 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 154 471 IPR045843 GO:0003700|GO:0006355
Vivi7g03760 478 MobiDBLite consensus disorder prediction 288 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03760 Vivi-Chr7 103566852 103568997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03760 287 471 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 57.368 9.20e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g03760 HLH 8.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03760 - - vvo:131618112 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03760 7 103566852 103568997 Vivi7g03760 7 103566852 103568997 ECH
Vivi2g08002 2 230027608 230029412 Vivi7g03760 7 103566852 103568997 PCT