Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03728 ATGGAAATTCAAGATGGTAACTTCATTTGGGATCATGAATCTGTGTCTCCAACTTTAATGGATGTGAATCTAGAAATCAAATGGGGGCAAAAAATAGCAGTTTGTGGACCAGTTGGTGCTGGAAAATCATCACTTTTGTATGCAATACTAGGAGAGATTCCCAAGATTTCAGGAACTGTAAATGTAGGTGGCACTCTTGCTTATGTTTCCCAATCTGCATGGATCCAGAGTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATACGAGAAAGCAATTAAGGCTTGTGCCTTAGACAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATTAACTTGAGTGGAGGGCAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGACATCTATCTTCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTCTTCAATGACTGTGTCATGACTGCTTTAAGGGAGAAAACAGTCGTTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATCTTGGTAATGGAGGATGGAAAAGTTATTCAATCAGACACGTATGAGAATCTCCTGATATCTGGAACAACCTTTAAGCTTCTTGTGAGTGCTCATAATGACACAATTACTGAGTTGAATCAAGTTAATGGAACTAAAAGAGGTTCTGAAAATGAGAATTTGTCTAATCCTCAAGACTCTCATGGTTTTTATCTCACTAAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCGATTGGTTCACAACTTACAAAAGAGGAAGAAAAAGTGATTGGTAATATTGGATGGAGGCCATTCTGGGATTATATTAATTATTCCAAAGGGACATTTATGATGTGTTTGATCATATTAGGACAATCTGTTTTTTTGGCTTTGCAAACTGCATCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACAAATGCCACTTTGATCGGAGTTTATACTTTAATTTCTTTTGCTAGTGTTGCTTTTGTATATGTGAGGTCTTACATTACTGCACTGCTTGGACTAAAAGCTTCTACAGCTTTCTTCTCAAGCTTCACTGCAGCTATCTTCAATGCTCCAATGTTGTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACCTATGTAGCATCTATGACAATTGAAATTGTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATACATTCAGCTATATTATCAAGCTACTGCTAGGGAACTAATAAGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTGGACAATTTTTTCAAAAACTACTTAACACTTGTGGACACAGATGCTTCATTGTTCTTTCATACCAATGTGGCAATGGAATGGGCAATTTTAAGGATTGAAGCACTTCAAAGTTTGACTGCCATCACTGCAGCTTTGTTACTTATTCTACTTCCTCAGGGATATGTATCTCCAGGCCTTGTGGGTCTGTCTCTTTCTTATGCACTTCACTTGACAACGGCCCAAACATTTTGGAGTAGATGGTTTTCCGACATGTTAAATTATATTATATCTGTTGAAAGAATGAAGCAATTCATTCACATACCGGTTGAGCCTCCTGCCATTCTGGATAATAACCGGCCACCATCTTCGTGGCCTTCCAAAGGCAGGATTGATCTTCAAGACTTGGAGATTAGGTATCGTCCTAATGCTCCATTAGTCCTCAAGGGAATTACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTTATTGATGCAATGAACATCTGCTCAATAGGGTTGAAGGATTTGAGAACGAGGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAATTTGGATCCTCTAGGTTTGTACTCAGATGATGAAATCTGGAAGGCTGTAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAACTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAACTGGAGCTTGGGACAAAGACAACTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACCAAATTCTTGTTCTGGATGAAGCTACTGCATCCATTGACTCTGCTACAGATGCCATTCTACAAAGAGTAATCAGACAAGAATTTGCAGAATGCACAGTTATAACAGTTGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTCTCTCTTATGGGAAAGTGGTGGAGTATGATGAGCCTTCAAAGCTAATGGAAACCAACTCTTCATTCTCTAAACTCGTAGCTGAATATTGGTCCAGTTGCAGCAGGAAGAATTCATTCCCAAAGATTAGCAGGCAGCAGCAATGA 2625 0.3905 MEIQDGNFIWDHESVSPTLMDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTLAYVSQSAWIQSGTVRDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVVLVTHQVEFLSEVDTILVMEDGKVIQSDTYENLLISGTTFKLLVSAHNDTITELNQVNGTKRGSENENLSNPQDSHGFYLTKNQSEGEISSIKGPIGSQLTKEEEKVIGNIGWRPFWDYINYSKGTFMMCLIILGQSVFLALQTASTFWLAIAIEIPKVTNATLIGVYTLISFASVAFVYVRSYITALLGLKASTAFFSSFTAAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITYVASMTIEIVVIICIMVSVTWQVLIVAVPAMVASIYIQLYYQATARELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDNFFKNYLTLVDTDASLFFHTNVAMEWAILRIEALQSLTAITAALLLILLPQGYVSPGLVGLSLSYALHLTTAQTFWSRWFSDMLNYIISVERMKQFIHIPVEPPAILDNNRPPSSWPSKGRIDLQDLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDAMNICSIGLKDLRTRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNQILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKVVEYDEPSKLMETNSSFSKLVAEYWSSCSRKNSFPKISRQQQ 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03728 874 Gene3D - 604 855 IPR027417 -
Vivi7g03728 874 Pfam ABC transporter transmembrane region 340 570 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g03728 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 854 IPR027417 -
Vivi7g03728 874 Gene3D ABC transporter type 1, transmembrane domain 274 601 IPR036640 GO:0005524|GO:0016020
Vivi7g03728 874 Gene3D - 1 244 IPR027417 -
Vivi7g03728 874 CDD ABC_6TM_ABCC_D2 303 596 IPR044726 GO:0140359
Vivi7g03728 874 SUPERFAMILY ABC transporter transmembrane region 293 603 IPR036640 GO:0005524|GO:0016020
Vivi7g03728 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 222 IPR027417 -
Vivi7g03728 874 CDD ABCC_MRP_domain1 1 201 - -
Vivi7g03728 874 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 621 855 IPR003439 GO:0005524
Vivi7g03728 874 ProSitePatterns ABC transporters family signature. 126 140 IPR017871 GO:0005524|GO:0016887
Vivi7g03728 874 Pfam ABC transporter 19 153 IPR003439 GO:0005524
Vivi7g03728 874 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 224 IPR003439 GO:0005524
Vivi7g03728 874 FunFam Multidrug resistance protein associated1 1 245 - -
Vivi7g03728 874 FunFam ABC transporter C family member 3 604 855 - -
Vivi7g03728 874 Pfam ABC transporter 638 786 IPR003439 GO:0005524
Vivi7g03728 874 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g03728 874 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 857 - -
Vivi7g03728 874 SMART AAA_5 28 201 IPR003593 GO:0016887
Vivi7g03728 874 SMART AAA_5 647 840 IPR003593 GO:0016887
Vivi7g03728 874 FunFam ABC transporter C family member 5 272 602 - -
Vivi7g03728 874 CDD ABCC_MRP_domain2 619 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03728 Vivi-Chr7 103209425 103213692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03728 619 853 Calmodulin-binding Proteins AT2G36910 32.365 2.94e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03728 - - vvo:131595584 1528.84