Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03727 ATGTCTTACTTTGAGAACTCAATAGGTGAAATTTCTGAGCCATTTCTACCTCAAAAAGTTGAAACAAAACAAACAGGACTATGTCATGCTACTTTTCTCAGTAAATTGATTTTCTCTTGGATTAATTCTTTACTCACTTTAGGTTATTCAAAACCACTCATTCTTGAAGACATACCTTCCCTTGTTTCTGAAGATGAGGCTAACATAGCCTATCAAAATTTTGTCAAATCTTGGGAATCACTTATTATAAAGAATAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTATAACTTTCTTAAAAGAAAACATATTAATAGCATTTTATGGATTAATCAGAACTATTTCTGTTGTGATTTCACCTTTAATACTATATGCTTTTGTCAAGTATTCTAATAGAACTGAGGCAGATCTCAGAGTAGGTCTTTCTATAGTTGGTTTCTTGATTGTCTCAAAAGTGTTTGACTCTTTGTCTCAAAGACATTGGTATTTTAACTCAAGGAGGTCAGGTATGAAAATGAGATCAGCTTTGATGGTAGCAATTTATCGAAAGCAGCTAAAACTTTCTAGTTCGGCGCGAACAAGACACTCGGCCGGCGAGATTGTGAATTACATTGCAGTTGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATATAGCATGGACTTCTGCATTGCAACTTGTTCTTTCCGTTGTTATTCTTTTTGGTGTTGTTGGTATTGGTGCACTTCCTGGTTTGGTCCCTCTTCTTATCTGTGGATTTCTCAATGTACCATTTGCAAGAATCTTACAAAATTGTCAGACACAGTTTATGATTGCACAGGACGAACGTCTTCGATCAACTTCGGAGGTTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAATTGAGTCGCTACGCGAGAAAGAGTTCAAATGGTTGTCTAAGGTGCAGATTTTGAAAGCTTCTAGTACATTTCTTTATTGGATGTCTCCTACAGTTATTTCTGCTGTTGTGTTCCTTGGATGTGCTGTTACCAATAGTGCACCATTGAATGCTGAAACTATTTTCACAGTTATTTCAACATTGAGAAACATGGGAGAGCCTGTTAAAATGATTCCACAGGCTCTATCCATTCTTATTCAAGTTAAGGTTTCCTTTGATCGTCTTAATAACTTTTTGCTTGATGAAGAGCTAAACAAAGATGATAGTGAAAGAAACCTAAAGCAATGTTCGGTTAATGCAGTGGAAATTCAAGATGGTAACTTCATTTGGGATCATGAATCTGTGTCTCCAACTTTAATGGATGTGAATCTAGAAATCAAATGGGGGCAAAAAATAGCAGTTTGTGGACCAGTTGGTGCTGGAAAATCATCACTTTTGTATGCAATACTAGGAGAGATTCCCAAGATTTCAGGAACTGTAAATGTAGGTGGCACTCTTGCTTATGTTTCCCAATCTGCATGGATCCAGAGTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATACGAGAAAGCAATTAAGGCTTGTGCCTTAGACAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATTAACTTGAGTGGAGGGCAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGACATCTATCTTCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTCTTCAATGACTGTGTCATGACTGCTTTAAGGGAGAAAACAGTCGTTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATCTTGGTAATGGAGGATGGAAAAGTTATTCAATCAGACACGTATGAGAATCTCCTGATATCTGGAACAACCTTTAAGCTTCTTGTGAGTGCTCATAATGACACAATTACTGAGTTGAATCAAGTTAATGGAACTAAAAGAGGTTCTGAAAATGAGAATTTGTCTAATCCTCAAGACTCTCATGGTTTTTATCTCACTAAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCGATTGGTTCACAACTTACAAAAGAGGAAGAAAAAGTGATTGGTAATATTGGATGGAGGCCATTCTGGGATTATATTAATTATTCCAAAGGGACATTTATGATGTGTTTGATCATATTAGGACAATCTGTTTTTTTGGCTTTGCAAACTGCATCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACAAATGCCACTTTGATCGGAGTTTATACTTTAATTTCTTTTGCTAGTGTTGCTTTTGTATATGTGAGGTCTTACATTACTGCACTGCTTGGACTAAAAGCTTCTACAGCTTTCTTCTCAAGCTTCACTGCAGCTATCTTCAATGCTCCAATGTTGTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACCTATGTAGCATCTATGACAATTGAAATTGTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATACATTCAGCTATATTATCAAGCTACTGCTAGGGAACTAATAAGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTGGACAATTTTTTCAAAAACTACTTAACACTTGTGGACACAGATGCTTCATTGTTCTTTCATACCAATGTGGCAATGGAATGGGCAATTTTAAGGATTGAAGCACTTCAAAGTTTGACTGCCATCACTGCAGCTTTGTTACTTATTCTACTTCCTCAGGGATATGTATCTCCAGGCCTTGTGGGTCTGTCTCTTTCTTATGCACTTCACTTGACAACGGCCCAAACATTTTGGAGTAGATGGTTTTCCGACATGTTAAATTATATTATATCTGTTGAAAGAATGAAGCAATTCATTCACATACCGGTTGAGCCTCCTGCCATTCTGGATAATAACCGGCCACCATCTTCGTGGCCTTCCAAAGGCAGGATTGATCTTCAAGACTTGGAGATTAGGTATCGTCCTAATGCTCCATTAGTCCTCAAGGGAATTACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTTATTGATGCAATGAACATCTGCTCAATAGGGTTGAAGGATTTGAGAACGAGGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAATTTGGATCCTCTAGGTTTGTACTCAGATGATGAAATCTGGAAGGCTGTAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAACTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAACTGGAGCTTGGGACAAAGACAACTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACCAAATTCTTGTTCTGGATGAAGCTACTGCATCCATTGACTCTGCTACAGATGCCATTCTACAAAGAGTAATCAGACAAGAATTTGCAGAATGCACAGTTATAACAGTTGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTCTCTCTTATGGGAAAGTGGTGGAGTATGATGAGCCTTCAAAGCTAATGGAAACCAACTCTTCATTCTCTAAACTCGTAGCTGAATATTGGTCCAGTTGCAGCAGGAAGAATTCATTCCCAAAGATTAGCAGGCAGCAGCAATGA 3879 0.3784 MSYFENSIGEISEPFLPQKVETKQTGLCHATFLSKLIFSWINSLLTLGYSKPLILEDIPSLVSEDEANIAYQNFVKSWESLIIKNNTKSLVLWSIVITFLKENILIAFYGLIRTISVVISPLILYAFVKYSNRTEADLRVGLSIVGFLIVSKVFDSLSQRHWYFNSRRSGMKMRSALMVAIYRKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHIAWTSALQLVLSVVILFGVVGIGALPGLVPLLICGFLNVPFARILQNCQTQFMIAQDERLRSTSEVLNSMKIIKLQSWEEKFKNLIESLREKEFKWLSKVQILKASSTFLYWMSPTVISAVVFLGCAVTNSAPLNAETIFTVISTLRNMGEPVKMIPQALSILIQVKVSFDRLNNFLLDEELNKDDSERNLKQCSVNAVEIQDGNFIWDHESVSPTLMDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTLAYVSQSAWIQSGTVRDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVVLVTHQVEFLSEVDTILVMEDGKVIQSDTYENLLISGTTFKLLVSAHNDTITELNQVNGTKRGSENENLSNPQDSHGFYLTKNQSEGEISSIKGPIGSQLTKEEEKVIGNIGWRPFWDYINYSKGTFMMCLIILGQSVFLALQTASTFWLAIAIEIPKVTNATLIGVYTLISFASVAFVYVRSYITALLGLKASTAFFSSFTAAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITYVASMTIEIVVIICIMVSVTWQVLIVAVPAMVASIYIQLYYQATARELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDNFFKNYLTLVDTDASLFFHTNVAMEWAILRIEALQSLTAITAALLLILLPQGYVSPGLVGLSLSYALHLTTAQTFWSRWFSDMLNYIISVERMKQFIHIPVEPPAILDNNRPPSSWPSKGRIDLQDLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDAMNICSIGLKDLRTRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNQILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKVVEYDEPSKLMETNSSFSKLVAEYWSSCSRKNSFPKISRQQQ 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03727 1292 ProSitePatterns ABC transporters family signature. 544 558 IPR017871 GO:0005524|GO:0016887
Vivi7g03727 1292 Gene3D - 413 646 IPR027417 -
Vivi7g03727 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 419 642 IPR003439 GO:0005524
Vivi7g03727 1292 SMART AAA_5 446 619 IPR003593 GO:0016887
Vivi7g03727 1292 SMART AAA_5 1065 1258 IPR003593 GO:0016887
Vivi7g03727 1292 Pfam ABC transporter 1056 1204 IPR003439 GO:0005524
Vivi7g03727 1292 Coils Coil 295 315 - -
Vivi7g03727 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1029 1272 IPR027417 -
Vivi7g03727 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 727 989 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g03727 1292 FunFam ABC transporter C family member 10 87 401 - -
Vivi7g03727 1292 FunFam ABC transporter C family member 5 690 1020 - -
Vivi7g03727 1292 CDD ABC_6TM_ABCC_D2 721 1014 IPR044726 GO:0140359
Vivi7g03727 1292 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 29 1275 - -
Vivi7g03727 1292 Pfam ABC transporter 437 571 IPR003439 GO:0005524
Vivi7g03727 1292 SUPERFAMILY ABC transporter transmembrane region 711 1021 IPR036640 GO:0005524|GO:0016020
Vivi7g03727 1292 SUPERFAMILY ABC transporter transmembrane region 92 399 IPR036640 GO:0005524|GO:0016020
Vivi7g03727 1292 Gene3D ABC transporter type 1, transmembrane domain 84 401 IPR036640 GO:0005524|GO:0016020
Vivi7g03727 1292 Gene3D ABC transporter type 1, transmembrane domain 692 1019 IPR036640 GO:0005524|GO:0016020
Vivi7g03727 1292 Gene3D - 1023 1273 IPR027417 -
Vivi7g03727 1292 FunFam ABC transporter C family member 3 1022 1273 - -
Vivi7g03727 1292 Pfam ABC transporter transmembrane region 116 364 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g03727 1292 Pfam ABC transporter transmembrane region 758 988 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g03727 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 104 385 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g03727 1292 CDD ABCC_MRP_domain1 419 619 - -
Vivi7g03727 1292 FunFam Multidrug resistance protein associated1 398 663 - -
Vivi7g03727 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1039 1273 IPR003439 GO:0005524
Vivi7g03727 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 640 IPR027417 -
Vivi7g03727 1292 CDD ABC_6TM_ABCC_D1 105 393 IPR044746 GO:0140359
Vivi7g03727 1292 CDD ABCC_MRP_domain2 1037 1257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03727 Vivi-Chr7 103206557 103213700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03727 406 684 Calmodulin-binding Proteins AT2G36910 26.000 1.29e-20 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03727 - - gmx:100784827 2021.9