Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03680 ATGAACACCAAAAACAATAACACCACTCAAGCTTGTGCTGCATGCAAATACCAACGTAGAAAATGTGCACCTGATTGCATCTTAGCGCCTTATTTCCCTCATGATCGTCATAGACAATTCATCAATGCTCACAAATTGTTTGGTGTTAGCAACATCAACAAAATCATTAAGTATCTTGATCCTCCTAGCAAGGATCAAGCCATGAGAACCATTATTTTTCAATCTGATATGCGGGCCAATGACCCTGTTGGCGGGTGTTACAGATATATTCAAGATCTTCAAGCTCAGATTGAATATCATAAAAATGAACTCGATCTTGTTCATCAACAACTCGCGATTCTCCGAGCTCAACAATCTCAACAACAACAACAACAAGAAGTTAGTTATGGTGATCAAGTTATTATGAATCAAGATTCTTTGTTAGGGTTCTATAACCCATCATCGGGATCGCTTGCGCCGGCTAATTATCATTACAATATTCAAAATCAAGATGTGCCACAATTGCAAGAACCGGAACAAGAACAATACATTATGATGCAAGAAAGTAATAGTAGTAGTATTAATAGTACTAATACTCCTTTGCAACAACATGTTAATAATTGGGGGGCTATGCAAAATTCTATTTCTTTATCATCTTTGTCATTGCATGGACAAAGTAGTAATGCTAGTGATGATTATGATCATAAGCCAATTCTAGATATTCCTTGTGATGAAAGAAATGAATTAGGGTTTGATTCCGGTGAAATACTACAAAACAGTGATGAAAATGATATGGTTTTGTATAAGATAGATAATAAAGTAATTAAAGCAGAAGATGATTACATTCAACATGTTCAAGTTGAAGGTCAATCTCAAGAACAAGATCATGATCTGAAAAGTGCAGCAACATTGTTTACTCTTACAAATTGTAATAGTTATGATCAAAGTGTTAATTAG 936 0.3472 MNTKNNNTTQACAACKYQRRKCAPDCILAPYFPHDRHRQFINAHKLFGVSNINKIIKYLDPPSKDQAMRTIIFQSDMRANDPVGGCYRYIQDLQAQIEYHKNELDLVHQQLAILRAQQSQQQQQQEVSYGDQVIMNQDSLLGFYNPSSGSLAPANYHYNIQNQDVPQLQEPEQEQYIMMQESNSSSINSTNTPLQQHVNNWGAMQNSISLSSLSLHGQSSNASDDYDHKPILDIPCDERNELGFDSGEILQNSDENDMVLYKIDNKVIKAEDDYIQHVQVEGQSQEQDHDLKSAATLFTLTNCNSYDQSVN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03680 311 Coils Coil 90 110 - -
Vivi7g03680 311 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vivi7g03680 311 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 169 - -
Vivi7g03680 311 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03680 Vivi-Chr7 102717919 102719084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03680 10 176 AS2 family AT3G13850 57.310 1.53e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi7g03680 LOB 4.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03680 - - cam:101515615 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07339 2 217273660 217275231 Vivi7g03680 7 102717919 102719084 PCT