Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03675 ATGGTCAAAGGTTTAATGATGTTCCAACAACAACAATTGGTGGAAGAAAACATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCTGGTAACAAAACTGAATTTGGAACAAGTTCTAGTTACCAACAACAACATCAACAACAACAACAACAACAACATCATCAACAGCAACAACACTTGGTTCCTCAAACTCAAACTCAATCTCAACCAATGAAGAAAAAGAGAAACCTCCCTGGTAACCCAGACCCTGAAGCTGAGGTTATAGCCATGTCACCGAAGAGTCTACTAGCGAAAAACCGATTCATATGTGAGATCTGCAACAAAGGCTTCCAACGAGATCAAAATCTTCAGCTTCACAGAAGAGGCCACAACTTACCATGGAAGTTGAAGCAAAGAACAAGCAAAGAAATCAGGAAGAAAGTGTATGTATGTCCAGAAACATCATGTGTGCATCATGATCCATCAAGGGCTTTGGGAGATTTGACTGGAATCAAGAAGCACTTTTGCAGAAAACACGGTGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACATGTGGAACAAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACACATAGAGCATTCTGTGATGCATTAGCAGAAGAAAGTGCAAGAGTTATAACAAATAATACAATTCCGATTATACCCTCATCACAATCACCATCATCTTCTCATCATCCTCATCATCATCATCACATGATAAATCTACAAAATCAATTCAATAATCATAATCATAATCATAATCAACATCAAGAACAAGAGGTTCGTAATAATTTTCCATTATTGAAAAAAGAACAACAACAACAACAACAACATCAAAGTTTTGATCTTTCGGAAATTCCACCTTGGCTTGGCCCACCAAATGTTGGTGAAATCTCATCATCAATATTCTCTCAAACACAACAACATCAAGAAAACCCTAACCCTAATCTTGTTCATGTTCATGGGCCCACATTGCCTCCTTACCAAACAGTACCTTCCCCACACATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAGATGGGTGCAACTATGAATAGAACAGGTTCTGCTTCTTCACCAGCTATGAATGCTATCAATGTTAGGTCCCACCAAGTTGATTCTCTCAACAATGTTTCTTCTGCTCATTTTGGTTTGAATTTGTTATCATCATCACGTGAACATGAACATGAACATCAACATGAACATCAACAACAACAACAACAAAACACAACAACAGCTACAACAGCAGCAACAGCAACAACATCCTCATATCTTAGTAATATTCATGATGTTATGTTTTCTTCTTCATCTCCTTCTGGATTTGAATCAACACAGTTTGATGAAATGTTTGGTGGCATTATGAATCCAAAGAAAGATCATCATGAGAGACAGCCTAAAACAACGGCCGGCGATGACGGTGGTGGTGGCGGAGGAGGTGGTGGAAATGATGGACTGACTAGAGATTTCTTGGGGCTCAGGCCACTTTCTCATAGTGACATACTAAGCATGGCAGGGATTGGAAACTGCATGAATGATGAACAACAAAATCAATCTCAAAAGCCATTATGGCAAGGTTAG 1659 0.39 MVKGLMMFQQQQLVEENMSNLTSASGEASASSGNKTEFGTSSSYQQQHQQQQQQQHHQQQQHLVPQTQTQSQPMKKKRNLPGNPDPEAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVITNNTIPIIPSSQSPSSSHHPHHHHHMINLQNQFNNHNHNHNQHQEQEVRNNFPLLKKEQQQQQQHQSFDLSEIPPWLGPPNVGEISSSIFSQTQQHQENPNPNLVHVHGPTLPPYQTVPSPHMSATALLQKAAQMGATMNRTGSASSPAMNAINVRSHQVDSLNNVSSAHFGLNLLSSSREHEHEHQHEHQQQQQQNTTTATTAATATTSSYLSNIHDVMFSSSSPSGFESTQFDEMFGGIMNPKKDHHERQPKTTAGDDGGGGGGGGGNDGLTRDFLGLRPLSHSDILSMAGIGNCMNDEQQNQSQKPLWQG 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03675 552 Gene3D Classic Zinc Finger 101 201 - -
Vivi7g03675 552 SUPERFAMILY beta-beta-alpha zinc fingers 103 200 IPR036236 -
Vivi7g03675 552 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 47 538 IPR031140 -
Vivi7g03675 552 MobiDBLite consensus disorder prediction 20 77 - -
Vivi7g03675 552 MobiDBLite consensus disorder prediction 20 89 - -
Vivi7g03675 552 SMART c2h2final6 180 200 IPR013087 -
Vivi7g03675 552 SMART c2h2final6 145 175 IPR013087 -
Vivi7g03675 552 SMART c2h2final6 104 126 IPR013087 -
Vivi7g03675 552 FunFam protein indeterminate-domain 5, chloroplastic-like 158 237 - -
Vivi7g03675 552 MobiDBLite consensus disorder prediction 480 495 - -
Vivi7g03675 552 MobiDBLite consensus disorder prediction 419 444 - -
Vivi7g03675 552 Coils Coil 265 285 - -
Vivi7g03675 552 Pfam Zinc-finger double-stranded RNA-binding 104 126 IPR022755 -
Vivi7g03675 552 FunFam protein indeterminate-domain 12-like 83 151 - -
Vivi7g03675 552 MobiDBLite consensus disorder prediction 463 517 - -
Vivi7g03675 552 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Vivi7g03675 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03675 Vivi-Chr7 102659682 102662503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03675 18 552 IDZ Gene Family AT3G13810 49.293 2.63e-144 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi7g03675 zf-C2H2_jaz 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03675 K25870 - gmx:100785687 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07343 2 217342508 217344903 Vivi7g03675 7 102659682 102662503 PCT