LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g03656	ATGGGGAATCAAAAGCTGAAATGGACGCAGGAAGAAGAAGACGCACTCATTGCCGGAATTGACAAACACGGCACAGGAAAATGGAAAACCATTCTCGTTGATCCTCAGTTCGCTCATTTACTCACTTCACGTTCCAACATCGACCTCAAGGATAAATGGCGAAATATGAATGTTTATGTGAATAATGGCTCACAAGGTTCTAGTTCTAGGACTCCGAAACCTAAAGCTGCTCCTGTTTCTACCAGTGCCGTTCTTCAAATTTGTGCTCCTCCTTCTGATACTGTTGCTGCCTCTGATCCTTCTCCAATTGAACCAGAAGTTAAAAATCCTCCAAGGTATAATGCCATGGTTTTTGACGCTCTATCTACATTAAAGGATACTAATGGGTCCGACCTCAATGCCATTGCTAGTTTCATTGAGCAAAAGCACCAGCAGGTTCCTCAAAATTTCAGAAGGGCACTGAGTTCAAGACTAAGGACCCTTGTGAATCAAGGGAAGCTTGAAAAGATAAATTAA	516	0.4244	MGNQKLKWTQEEEDALIAGIDKHGTGKWKTILVDPQFAHLLTSRSNIDLKDKWRNMNVYVNNGSQGSSSRTPKPKAAPVSTSAVLQICAPPSDTVAASDPSPIEPEVKNPPRYNAMVFDALSTLKDTNGSDLNAIASFIEQKHQQVPQNFRRALSSRLRTLVNQGKLEKIN	171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g03656	171	FunFam	Telomere repeat-binding factor 1	2	58	-	-
	Vivi7g03656	171	Gene3D	-	8	88	-	-
	Vivi7g03656	171	Pfam	linker histone H1 and H5 family	111	170	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Vivi7g03656	171	CDD	H15	111	169	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Vivi7g03656	171	ProSiteProfiles	Myb-like domain profile.	1	57	IPR001005	-
	Vivi7g03656	171	Gene3D	-	106	171	IPR036388	-
	Vivi7g03656	171	SUPERFAMILY	Homeodomain-like	3	58	IPR009057	-
	Vivi7g03656	171	CDD	SANT_TRF	7	57	-	-
	Vivi7g03656	171	Pfam	Myb-like DNA-binding domain	6	56	IPR001005	-
	Vivi7g03656	171	SMART	sant	4	59	IPR001005	-
	Vivi7g03656	171	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	64	IPR017930	-
	Vivi7g03656	171	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	109	171	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Vivi7g03656	171	MobiDBLite	consensus disorder prediction	60	76	-	-
	Vivi7g03656	171	MobiDBLite	consensus disorder prediction	60	81	-	-
	Vivi7g03656	171	SUPERFAMILY	"Winged helix" DNA-binding domain	110	170	IPR036390	-
	Vivi7g03656	171	SMART	h15plus2	107	169	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Vivi7g03656	171	PANTHER	SINGLE MYB HISTONE 4	1	170	IPR044597	GO:0003691

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g03656	Vivi-Chr7	102336520	102337959	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g03656	1	170	Single Myb Histone (SMH) Gene Family	AT1G72740	50.538	5.12e-50	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Vivi7g03656		Linker_histone	1.5e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g03656	K09422		-	gmx:780537	218.779